R Observatory: Metrics for GINAX version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GINAX

0.1.0Package record

Performs Genome-Wide Iterative Fine-Mapping for Non-Gaussian Data using GINA-X

0packages depend

2.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Shuangshuang XuCRAN page ↗

Implements GINA-X, a genome-wide iterative fine-mapping method designed for non-Gaussian traits. It supports the identification of credible sets of genetic variants.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GINAX", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ginax

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GINAX

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GINAX

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02

Show 2 earlier changesHide 2 earlier changes

ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 11 (6 internal)
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

GINAX package HTML

How these are measured

Downloads

2.1K

CRAN downloads in the past year

Rank #22,572 · ~6/day · ~178/mo

Releases R versions

Daily download trend is not available in this view yet.

22230 days

57990 days

2.1K1 year

Compare downloads with other packages →

Also on60 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing GINAX adds 69 packages (38 with compiled code, 54 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 4.2.0

Imports (5)

GA caret memoise Matrix (>= 1.2-18)stats

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown formatR rrBLUP testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Shuangshuang Xu

Author, Maintainer since 0.1.0 (2025)

Marco Ferreira

Author

Allison Tegge

Author

Jacob Williams

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
record
2025-10-14 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-14
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.2.0
Bundled data: 921 KB / 4 files
Download size: 932 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GINAX")

Format

Xu, S., Ferreira, M., Tegge, A., & Williams, J. (2025). GINAX: Performs Genome-Wide Iterative Fine-Mapping for Non-Gaussian Data using GINA-X (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.GINAX

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GINAX version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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