R Observatory: Metrics for pcmabc version 1.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pcmabc

1.1.3

Approximate Bayesian Computations for Phylogenetic Comparative Methods

0packages depend

2.6Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Krzysztof BartoszekFirst published 2018-12-189 releasesCRAN page ↗

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) doi:10.5506/APhysPolBSupp.12.25. The suggested geiger package can be obtained from CRAN's archive https://cran.r-project.org/src/contrib/Archive/geiger/, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive https://cran.r-project.org/src/contrib/Archive/distory/, suggested to take latest version.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pcmabc", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pcmabc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pcmabc

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pcmabc

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 2.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

8

Dependencies · direct

Check history

NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

2.6K

CRAN downloads in the past year

Rank #16,973 · ~7/day · ~215/mo

Releases R versions

Daily download trend is not available in this view yet.

17130 days

62990 days

2.6K1 year

Compare downloads with other packages →

Also on92 r2u13 autocran

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.9.1

Imports (8)

apegraphicsmethodsmvSLOUCH phangornstatsutilsyuima

LinkingTo (0)

none

Suggests (2)

geiger distory

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (2)

Krzysztof Bartoszek

no longer listed · 1.0 to 1.1.3

Pietro Lio'

no longer listed · 1.0 to 1.1.3

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.3Latest
2022-05-09 · current release · diff ↗
1.1.2
2022-05-05 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.1
2021-01-05 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.1
2020-01-22 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.4
2019-04-03 · diff ↗
1.0.3
2019-03-18 · diff ↗
1.0.2
2019-02-07 · diff ↗
1.0.1
2019-02-05 · diff ↗

Show 2 earlier events

1.0
2018-12-18
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-12-18
Total releases: 9 / 8 yrs
License: GPL (>= 2) | file LICENCE OSI
Minimum R: ≥ 2.9.1
Download size: 42 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pcmabc")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pcmabc version 1.1.3 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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