R Observatory: Metrics for mvSLOUCH version 2.7.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mvSLOUCH

2.7.7

Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

3packages depend

6.2Kdownloads / year

40.8%test coverage

13/13checks pass

Overview

About

Maintained by Krzysztof BartoszekFirst published 2013-10-1143 releasesCRAN page ↗

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F. Hansen (2012) doi:10.1016/j.jtbi.2012.08.005 and K. Bartoszek, and J. Tredgett Clarke, J. Fuentes-Gonzalez, V. Mitov, J. Pienaar, M. Piwczynski, R. Puchalka, K. Spalik, K. L. Voje (2024) doi:10.1111/2041-210X.14376. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from https://github.com/venelin/PCMBaseCpp/.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mvSLOUCH", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mvslouch

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mvSLOUCH

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mvSLOUCH

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.08

40.8%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 91%

Downloads

6.2K

CRAN downloads in the past year

Rank #9,494 · ~17/day · ~517/mo

Releases R versions

Daily download trend is not available in this view yet.

19230 days

99190 days

6.2K1 year

Compare downloads with other packages →

Also on145 r2u21 autocran

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0abind

Imports (9)

apegraphicsmethodsmvtnormMatrixouch PCMBasestatsmatrixcalc

LinkingTo (0)

none

Suggests (6)

PCMBaseCpp ggplot2 knitr rmarkdown mvMORPH testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

pcmabc GLSME PCMBase

Code & Tests

People & History

People (4)

Maintainer (1)

Krzysztof Bartoszek

Maintainer, Author

Authors (1)

Krzysztof Bartoszek

Maintainer, Author

Contributors (3)

John Clarke

Contributor · added in 2.7

Jesualdo Fuentes-Gonzalez

Contributor · added in 2.6.2

Jason Pienaar

Contributor · added in 2.6.2

Package Timeline

43 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.7.7Latest
2025-07-24 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.7.6
2023-11-20 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.7.5
2022-08-17 · diff ↗
2.7.4
2022-05-04 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.7.3
2021-11-25 · diff ↗
2.7.2
2021-11-10 · diff ↗
2.7
2021-11-05 · diff ↗
2.6.5
2021-06-03 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.6.4
2021-05-15 · diff ↗
2.6.3
2021-03-27 · diff ↗

Show 41 earlier events

2.6.2
2021-03-09 · diff ↗
2.6.1
2020-10-30 · diff ↗
2.6
2020-10-24 · diff ↗
2.5
2020-06-03 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.4
2020-02-24 · diff ↗
2.3
2020-02-06 · diff ↗
2.2
2020-01-12 · diff ↗
2.1.1
2019-12-06 · diff ↗
2.1
2019-12-01 · diff ↗
2.0.7
2019-08-01 · diff ↗
2.0.6
2019-05-10 · diff ↗
R
R 3.6.0 released · 2019-04-26
2.0.5
2019-04-25 · diff ↗
2.0.4
2019-04-11 · diff ↗
2.0.3
2019-03-18 · diff ↗
2.0.2
2019-03-07 · diff ↗
2.0.1
2019-01-29 · diff ↗
2.0.0
2019-01-25 · diff ↗
1.3.4
2018-05-16 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.3.3
2017-06-18 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.3.2
2016-06-06 · diff ↗
1.3.1
2016-05-11 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.3
2016-03-06 · diff ↗
1.2.2
2016-02-03 · diff ↗
1.2.1
2015-08-12 · diff ↗
1.2
2015-07-26 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.1.5
2015-01-22 · diff ↗
1.1.4
2014-11-03 · diff ↗
1.1.3
2014-07-31 · diff ↗
1.1.2
2014-07-21 · diff ↗
1.1.1
2014-05-30 · diff ↗
R
R 3.1.0 released · 2014-04-10
1.1
2013-12-27 · diff ↗
3.0.3
2013-12-26 · diff ↗
1.0
2013-10-11
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2013-10-11
Total releases: 43 / 13 yrs
License: GPL (>= 2) | file LICENCE OSI
Minimum R: ≥ 3.5.0
Download size: 2.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mvSLOUCH")

Format

Bartoszek, K., Clarke, J., Fuentes-Gonzalez, J., & Pienaar, J. (2025). mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses (Version 2.7.7) [Computer software]. https://doi.org/10.32614/CRAN.package.mvSLOUCH

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mvSLOUCH version 2.7.7 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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