R Observatory: Metrics for odeGUTS version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

odeGUTS

1.1.0Package record

Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code

1packages depend

3.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Carlo RomoliCRAN page ↗GitHub ↗Issues ↗

Allows performing forwards prediction for the General Unified Threshold model of Survival using compiled ode code. This package was created to avoid dependency with the 'morse' package that requires the installation of 'JAGS'. This package is based on functions from the 'morse' package v3.3.1: Virgile Baudrot, Sandrine Charles, Marie Laure Delignette-Muller, Wandrille Duchemin, Benoit Goussen, Nils Kehrein, Guillaume Kon-Kam-King, Christelle Lopes, Philippe Ruiz, Alexander Singer and Philippe Veber (2021) https://CRAN.R-project.org/package=morse.

Changes in 1.1.0

Change of maintainer

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("odeGUTS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bgoussen/odeGUTS")

Development version from bgoussen/odeGUTS. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-odeguts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-odeGUTS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-odeGUTS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.0

READMEYes · 173 wordsVignettesNoNEWSYes · 100% structured · mentions 1.1.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5 (2 internal)includes a package overview page
Examples that run: 100%1 run in a plain check
Exported functions with examples: 33%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 20%

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #17,791 · ~9/day · ~283/mo

Releases R versions

Daily download trend is not available in this view yet.

26030 days

72390 days

3.4K1 year

Compare downloads with other packages →

Also on375 r2u7 autocran

How downloads are counted

Repository

bgoussen/odeguts ↗Account: bgoussen

2Stars

1Forks

0Open issues

0Open PRs

6Releases

39Commits

1Commit identities

License file reads as GPL-3.0 · 39 commits · Last activity 2025-10-28

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 2
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2021-08-12 · 22026-07-07 · 2

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/bgoussen/odeguts on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing odeGUTS adds 22 packages (14 with compiled code, 20 MB of source tarballs). Heaviest: stringi 11 MB, deSolve 1.9 MB, vctrs 1.0 MB.

Depends (1)

R >= 2.10

Imports (6)

deSolve magrittrstatsdplyr zoo tidyr

LinkingTo (0)

none

Suggests (1)

morse

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

BeeGUTS

How these are counted

Code & Tests

Datasets

People & History

People (2)

Carlo Romoli

Maintainer since 1.1.0 (2025) · added in 1.1.0

Benoit Goussen

Author

Previously maintained by Benoit Goussen (1.0.0 to 1.0.3).

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.1.0Latest
record
2025-11-05 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.3
record
2024-10-04 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.2
record
2023-04-30 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.1
record
2021-09-10 · diff ↗
1.0.0
record
2021-08-13
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-08-13
Total releases: 5 / 5 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 20 KB / 1 file
Download size: 39 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("odeGUTS")

Format

Romoli, C., & Goussen, B. (2025). odeGUTS: Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.odeGUTS

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for odeGUTS version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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