R Observatory: Metrics for morse version 3.6.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

morse

3.6.0Package record

Modelling Reproduction and Survival Data in Ecotoxicology

0packages dependsuggested by 1

6.6Kdownloads / year

37.5%test coverage

13/13flavors OK

Overview

About

Maintained by Virgile BaudrotCRAN page ↗Repository ↗Issues ↗

Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival and reproduction Data. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See our companion paper Baudrot and Charles (2021) doi:10.21105/joss.03200, as well as complementary details in Baudrot et al. (2018) doi:10.1021/acs.est.7b05464 and Delignette-Muller et al. (2017) doi:10.1021/acs.est.6b05326.

Changes in 3.6.0

CHANGE IN CODE

Remove dependency on epitools package (replaced by internal function using stats::qgamma).

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("morse", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-morse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-morse

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-morse

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 9.3 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 3.6.0

README· In the repository, left out of the releaseVignettesYes · 3 · dynamicNEWSYes · 100% structured · mentions 3.6.0Citation fileNoWebsitenot declared in DESCRIPTION

Description cites a JOSS paper

Help pages: 62includes a package overview page
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 24%

Vignettes (3)

How these are measured

Downloads

6.6K

CRAN downloads in the past year

Rank #5,516 · ~18/day · ~552/mo

Releases R versions

Daily download trend is not available in this view yet.

65530 days

1.5K90 days

6.6K1 year

Compare downloads with other packages →

Also on362 r2u6 autocran

How downloads are counted

Repository

gitlab.in2p3.fr/mosaic-software/morse ↗

0Stars

0Forks

1Open issues

0Open PRs

0Releases

1,352Commits

12Commit identities

1,352 commits · Last activity 2026-10-13

Responsiveness

not measured

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against gitlab.in2p3.fr/mosaic-software/morse on 2026-10-21.

Continuous integration (1)

Travis CI (config file)

Reproducibility and dev environment (1)

Dockerfile

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing morse adds 37 packages (21 with compiled code, 34 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, deSolve 1.9 MB.

Depends (1)

R >= 4.0.0

Imports (16)

coda deSolve dplyrgraphicsgrDevicesggplot2gridgridExtra magrittrmethodsreshape2 rjagsstatstibble tidyr zoo

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

odeGUTS

How these are counted

Code & Tests

Datasets

People & History

People (11)

Virgile Baudrot

Author, Maintainer since 3.3.2 (2022) · added in 3.0.0

Sandrine Charles

Author

Marie Laure Delignette-Muller

Author

Philippe Veber

Author

Wandrille Duchemin

Contributor

Benoit Goussen

Contributor · added in 3.2.0

Nils Kehrein

Contributor · added in 3.3.0

Guillaume Kon-Kam-King

Contributor · added in 2.0.0

Christelle Lopes

Contributor

Philippe Ruiz

Contributor

Alexander Singer

Contributor · added in 3.2.4

Previously maintained by Philippe Veber (1.0.1 to 3.3.1).

Listed in earlier versions (1)

Guillaume Kon- Kam-king

no longer listed · 2.1.0 to 2.2.0

Releases (20)

Pick two releases to compare their code metrics.

3.6.0Latest
record
2026-10-13 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
3.3.5
record
2026-01-14 · diff ↗
R
R 4.5.0 released · 2025-04-11
unarchivedReturned to CRAN
2024-09-18
3.3.4
record
2024-09-18 · diff ↗
archivedRemoved from CRAN
2024-07-18
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2022-10-28
3.3.2
record
2022-10-28 · diff ↗
archivedRemoved from CRAN
2022-06-29
check problems were not corrected in time
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
3.3.1
record
2021-02-04 · diff ↗
3.3.0
record
2021-01-27 · diff ↗

Show 21 earlier eventsHide 21 earlier events

3.2.7
record
2020-11-09 · diff ↗ ·
added 1 export
MFx_ode
R
R 4.0.0 released · 2020-04-24
3.2.5
record
2019-09-27 · diff ↗
3.2.4
record
2019-06-21 · diff ↗
R
R 3.6.0 released · 2019-04-26
3.2.2
record
2019-02-22 · diff ↗ ·
added 1 export
predict_Nsurv_ode
3.2.0
record
2018-11-12 · diff ↗ ·
added 4 exports
plot_prior_post, predict_Nsurv, predict_Nsurv_check, predict_ode
3.1.1
record
2018-06-12 · diff ↗
3.1.0
record
2018-06-05 · diff ↗ ·
added 2 exports
MFx, priors_distribution
R
R 3.5.0 released · 2018-04-23
3.0.0
record
2018-01-30 · diff ↗ ·
removed 1 export
as.survData

added 5 exports
LCx, is_exposure_constant, priors_survData, survData_join, survFit
R
R 3.4.0 released · 2017-04-21
2.2.0
record
2016-06-08 · diff ↗ ·
added 2 exports
plotDoseResponse, survFitTKTD
R
R 3.3.0 released · 2016-05-03
2.1.1
record
2015-12-21 · diff ↗
2.1.0
record
2015-12-14 · diff ↗ ·
added 1 export
ppc
2.0.0
record
2015-09-01 · diff ↗ ·
removed 8 exports
repro.check.data, repro.data, repro.fit, repro.parfit, repro.survplot, repro.cumulplot, repro.fullsurvplot, repro.convergence

added 7 exports
as.survData, reproData, reproDataCheck, reproFitTT, survData, survDataCheck, survFitTT
R
R 3.2.0 released · 2015-04-16
1.0.2
record
2014-07-03 · diff ↗
1.0.1
record
2014-06-19
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-06-19
Total releases: 20 / 12 yrs
License: MIT + file LICENSE OSI · relicensed from GPL (>= 2) in 3.3.2
Minimum R: ≥ 4.0.0
Bundled data: 109 KB / 10 files
Download size: 626 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("morse")

Format

Baudrot, V., Charles, S., Delignette-Muller, M. L., Duchemin, W., Goussen, B., Kehrein, N., Kon-Kam-King, G., Lopes, C., Ruiz, P., Singer, A., & Veber, P. (2026). morse: Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.6.0) [Computer software]. https://doi.org/10.32614/CRAN.package.morse

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for morse version 3.6.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →