R Observatory: Metrics for BeeGUTS version 1.5.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BeeGUTS

1.5.0

General Unified Threshold Model of Survival for Bees using Bayesian Inference

0packages depend

5.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Carlo RomoliFirst published 2022-08-096 releasesCRAN page ↗GitHub ↗

Tools to calibrate, validate, and make predictions with the General Unified Threshold model of Survival adapted for Bee species. The model is presented in the publication from Baas, J., Goussen, B., Miles, M., Preuss, T.G., Roessing, I. (2022) doi:10.1002/etc.5423 and Baas, J., Goussen, B., Taenzler, V., Roeben, V., Miles, M., Preuss, T.G., van den Berg, S., Roessink, I. (2024) doi:10.1002/etc.5871, and is based on the GUTS framework Jager, T., Albert, C., Preuss, T.G. and Ashauer, R. (2011) doi:10.1021/es103092a. The authors are grateful to Bayer A.G. for its financial support.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BeeGUTS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ibacon-GmbH-Modelling/BeeGUTS")

Development version from ibacon-GmbH-Modelling/BeeGUTS. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-beeguts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BeeGUTS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BeeGUTS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 34.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

17

Dependencies · direct

Check history

OK2026-08-16
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-08-15
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-08-14
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-08-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 9 earlier snapshots

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-29
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-27
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-07-03
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-01
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 235 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 48%
Documented parameters: 100%
Return-value docs: 100%
References docs: 15%

Downloads

5.3K

CRAN downloads in the past year

Rank #9,571 · ~14/day · ~438/mo

Releases R versions

Daily download trend is not available in this view yet.

28730 days

98690 days

5.3K1 year

Compare downloads with other packages →

Also on561 r2u47 autocran

Repository

GitHub ↗ ibacon-gmbh-modelling/beeguts

0Stars

0Forks

0Open issues

0Open PRs

1Releases

275Commits

4Contributors

License GPL-3.0 · 275 commits · Last activity 2026-01-16

Releases over time

2025-12-19 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/ibacon-gmbh-modelling/beeguts on 2026-08-16.

Continuous integration (2)

GitHub ActionsTravis CI

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (17)

methodsRcpp RcppParallel rstan (>= 2.26.0)rstantools data.table tidyr ggplot2 cowplot dplyr magrittrutilsgridExtra odeGUTSparalleldoParallel foreach

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders (>= 2.26.0)

Suggests (2)

rmarkdown knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Carlo Romoli

Author, Maintainer · added in 1.4.0

Authors (2)

Carlo Romoli

Author, Maintainer · added in 1.4.0

Benoit Goussen

Author

Contributors (1)

Liubov Zakharova

Contributor

Copyright holders (2)

Bayer AG

Copyright holder, Funder

ibacon GmbH

Copyright holder · added in 1.3.0

Funders (1)

Bayer AG

Copyright holder, Funder

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.5.0Latest
2026-01-15 · current release · diff ↗
1.4.0
2025-11-11 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.3.0
2024-10-23 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.3
2023-09-18 · diff ↗
1.1.2
2023-05-11 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.0
2022-08-09
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-08-09
Total releases: 6 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 2.3 MB / 3 files
Download size: 2.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BeeGUTS")

Format

Romoli, C., Bayer AG, ibacon GmbH, Goussen, B., & Zakharova, L. (2026). BeeGUTS: General Unified Threshold Model of Survival for Bees using Bayesian Inference (Version 1.5.0) [Computer software]. https://doi.org/10.32614/CRAN.package.BeeGUTS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BeeGUTS version 1.5.0 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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