R Observatory: Metrics for mi4p version 1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mi4p

1.3Package record

Multiple Imputation for Proteomics

0packages depend

3.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Frederic BertrandCRAN page ↗GitHub ↗Website ↗Issues ↗

A framework for multiple imputation for proteomics is proposed by Marie Chion, Christine Carapito and Frederic Bertrand (2021) doi:10.1371/journal.pcbi.1010420. It is dedicated to dealing with multiple imputation for proteomics.

Changes in 1.3

Maintainer email update
Added unit tests
Added package doi

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("mi4p", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mariechion/mi4p")

Development version from mariechion/mi4p. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mi4p

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02

Show 2 earlier changesHide 2 earlier changes

ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3

READMEYes · 393 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.3Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 32 (1 internal)includes a package overview page
Examples that run: 73%22 run in a plain check · 8 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 59%

Vignettes (1)

Multiple imputation for proteomics

How these are measured

Downloads

3.6K

CRAN downloads in the past year

Rank #9,302 · ~10/day · ~300/mo

Releases R versions

Daily download trend is not available in this view yet.

35430 days

1K90 days

3.6K1 year

Compare downloads with other packages →

Also on101 r2u52 c2d4u

How downloads are counted

Repository

mariechion/mi4p ↗Account: mariechion

7Stars

0Forks

0Open issues

0Open PRs

0Releases

74Commits

3Commit identities

License file reads as GPL-3.0 · 74 commits · Last activity 2025-09-19

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-07-19 · 72026-07-07 · 7

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/mariechion/mi4p on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2025-09-19

pkgdown site last built 2025-09-19

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Installing mi4p adds 133 packages (72 with compiled code, 99 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB. 2 more not on CRAN are not measured.

Depends (1)

R >= 3.5.0

Imports (7)

emmeans foreach imp4p impute limma mice stringr

LinkingTo (0)

none

Suggests (8)

Biobase knitr R.rsp markdown rmarkdown DAPAR ProteoMM testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (9)

Frederic Bertrand

Maintainer since 0.7 (2021), Author

Author

Author

Contributor

Contributor

Quentin Giai-Gianetto

Contributor

Davis McCarthy

Contributor

Gordon Smyth

Contributor

Samuel Wieczorek

Contributor

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.3Latest
record
2025-09-20 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.2
record
2024-10-03 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1
record
2023-03-23 · diff ↗
1.0
record
2022-06-13 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.9
record
2022-03-23 · diff ↗
0.8
record
2022-03-15 · diff ↗ ·
added 8 exports
check.conditions, check.design, make.contrast, make.design, make.design.1, make.design.2, make.design.3, test.design
0.7
record
2021-08-19
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-08-19
Total releases: 7 / 5 yrs
License: GPL (>= 2) OSI
Copyright: See the file COPYRIGHTS
Minimum R: ≥ 3.5.0
Bundled data: 1.3 MB / 6 files
Download size: 2.0 MB

Appears in task views

Missing Data Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mi4p")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mi4p version 1.3 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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