R Observatory: Metrics for ggPMX version 1.3.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ggPMX

1.3.2

'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

2packages depend

10.7Kdownloads / year

87.1%test coverage

13/13checks pass

Overview

About

Maintained by Aleksandr PogodaevFirst published 2019-05-1625 releasesCRAN page ↗GitHub ↗

At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling activities in order to reduce the overall effort required for generating such plots. For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox, called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP doi:10.1002/psp4.12161. While not required, you can get/install the 'R' 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization. When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required Chart Data instead of exporting it from the 'Monolix' gui.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ggPMX", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ggPMXdevelopment/ggPMX")

Development version from ggPMXdevelopment/ggPMX. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ggpmx

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ggPMX

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ggPMX

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 23.2 min · r-devel-linux-x86_64-debian-clang

Code health

Yes

Tests · ratio 0.80

87.1%

Coverage · measured lines

99%

Documentation · exports

20

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 4,759 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 24%
Documented parameters: 97%
Return-value docs: 85%
References docs: 0%

Downloads

10.7K

CRAN downloads in the past year

Rank #3,993 · ~29/day · ~895/mo

Releases R versions

Daily download trend is not available in this view yet.

60730 days

2.1K90 days

10.7K1 year

Compare downloads with other packages →

Also on209 r2u17 autocran

Repository

GitHub ↗ ggpmxdevelopment/ggpmx

40Stars

14Forks

57Open issues

4Open PRs

11Releases

1,773Commits

32Contributors

rpmxpharmacometricsreporting

1,773 commits · Last activity 2026-07-01 · 0% stars, 30d

Stars over time

2025-01-24 · 392026-07-07 · 40

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ggpmxdevelopment/ggpmx on 2026-08-16.

Continuous integration (2)

GitHub ActionsTravis CI

Reproducibility and dev environment (1)

Dev Container

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

30 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (20)

data.table yaml R6 gtable ggplot2 ggforce magrittr stringr assertthat GGally zoo knitr rmarkdown tidyr dplyr purrr readr rlang checkmate scales

LinkingTo (0)

none

Suggests (11)

testthat xtable vdiffr rxode2 nlmixr2est nlmixr2datanlmelixoftConnectors xgxr withr lifecycle

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

nlmixr2 nlmixr2rpt

Code & Tests

People & History

People (19)

Maintainer (1)

Aleksandr Pogodaev

Author, Maintainer · added in 1.3.0

Authors (13)

Aleksandr Pogodaev

Author, Maintainer · added in 1.3.0

Author

Author

Author

Author

Author

Author · added in 0.9.6

Amine Gassem

Author

Seid Hamzic

Author · added in 1.2.1

Inga Ludwig

Author

Danielle Navarro

Author · added in 1.3.0

Ines Paule

Author

Didier Renard

Author

Contributors (5)

Mahmoud Ali

Contributor · added in 1.3.0

Kyle T Baron

Contributor · added in 1.2.1

Benjamin Guiastrennec

Contributor · added in 1.2.1

Qing Xi Ooi

Contributor

Ibtissem Rebai

Contributor · added in 1.3.0

Copyright holders (1)

Novartis Pharma AG

Copyright holder

Package Timeline

25 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.3.2Latest
2025-09-06 · current release · diff ↗
1.3.1
2025-08-27 · diff ↗
1.3.0
2025-07-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.11
2023-11-30 · diff ↗
1.2.10
2023-06-17 · diff ↗
1.2.9
2023-06-01 · diff ↗
unarchivedReturned to CRAN
2023-06-01
archivedRemoved from CRAN
2023-05-31
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
1.2.8
2022-06-18 · diff ↗
1.2.7
2022-06-10 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.2.6
2022-02-01 · diff ↗

Show 21 earlier events

1.2.5
2022-01-15 · diff ↗
1.2.4
2021-09-20 · diff ↗
1.2.3
2021-05-29 · diff ↗
1.2.2
2021-05-28 · diff ↗
1.2.1
2021-05-25 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.1.2
2020-06-25 · diff ↗
1.1.1
2020-05-15 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.1
2020-04-09 · diff ↗
unarchivedReturned to CRAN
2020-04-09
archivedRemoved from CRAN
2020-04-03
check problems were not corrected in time Errors in '\donttest' parts of examples
1.0
2020-01-12 · diff ↗
0.9.8
2019-11-19 · diff ↗
0.9.7
2019-11-18 · diff ↗
0.9.6
2019-10-27 · diff ↗
0.9.4
2019-06-06 · diff ↗
0.9.3
2019-05-26 · diff ↗
0.9.2
2019-05-17 · diff ↗
0.9.1
2019-05-16
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-05-16
Total releases: 25 / 7 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5
Download size: 4.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ggPMX")

Format

Pogodaev, A., Novartis Pharma AG, Ali, M., Baltcheva, I., Baron, K. T., Bartels, C., Bhattacharya, S., Bieth, B., Dumortier, T., Fidler, M., Gassem, A., Guiastrennec, B., Hamzic, S., Ludwig, I., Navarro, D., Ooi, Q. X., Paule, I., Rebai, I., & Renard, D. (2025). ggPMX: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models (Version 1.3.2) [Computer software]. https://doi.org/10.32614/CRAN.package.ggPMX

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ggPMX version 1.3.2 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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