R Observatory: Metrics for biomod2 version 4.3-4-6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

biomod2

4.3-4-6

Ensemble Platform for Species Distribution Modeling

5packages depend

87.2Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Maya GuéguenFirst published 2012-11-0926 releasesCRAN page ↗GitHub ↗

Functions for species distribution modeling, calibration and evaluation, ensemble of models, ensemble forecasting and visualization. The package permits to run consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences) dataset and to combine them in ensemble models and ensemble projections. Some bench of other evaluation and visualisation tools are also available within the package.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("biomod2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("biomodhub/biomod2")

Development version from biomodhub/biomod2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-biomod2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-biomod2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-biomod2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 12.9 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

18

Dependencies · direct

Check history

NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-27
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 847 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 95%
Return-value docs: 91%
References docs: 7%

Downloads

87.2K

CRAN downloads in the past year

Rank #1,541 · ~239/day · ~7.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

5.2K30 days

16.9K90 days

87.2K1 year

Compare downloads with other packages →

Also on2.2K r2u55 autocran2.9K conda_forge89 c2d4u

Repository

GitHub ↗ biomodhub/biomod2

128Stars

31Forks

21Open issues

1Open PRs

11Releases

1,259Commits

14Contributors

1,259 commits · Last activity 2026-07-17 · 0% stars, 30d

Stars over time

2025-08-08 · 1022026-07-24 · 128

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/biomodhub/biomod2 on 2026-08-23.

Continuous integration (1)

GitHub Actions

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

41 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (18)

statsutilsmethodsterra sp reshape reshape2 abind foreach ggplot2 gbmrpartMASSpROC PresenceAbsence dplyr rlang scales

LinkingTo (0)

none

Suggests (30)

Hmisc gammgcvearth maxnet mdannetrandomForest xgboost cito torch car caret dismo ENMeval doParallel raster ggpubr testthat knitr markdown rmarkdown tidyterra ggtext patchwork kableExtra DT R.utils paletteer viridis

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

5direct

4indirect

RRgeo ecospat gecko blockCV caretSDM

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Maya Guéguen

Author, Maintainer · added in 4.3-4-3

Authors (4)

Maya Guéguen

Author, Maintainer · added in 4.3-4-3

Hélène Blancheteau

Author · added in 4.3-4-3

Rémi Lemaire-Patin

Author · added in 4.3-4-3

Wilfried Thuiller

Author

Listed in earlier versions (7)

Robin Engler

no longer listed · 2.15.2 to 4.2-6-2

Damien Georges

no longer listed · 2.15.2 to 4.2-6-2

Frank Breiner

no longer listed · 3.3-7 to 4.2-6-2

Maya Gueguen

no longer listed · 3.5.1 to 4.2-6-2

Bruno Lafourcade

no longer listed · 4.1-2 to 4.2-6-2

Remi Patin

no longer listed · 4.1-2 to 4.2-6-2

Helene Blancheteau

no longer listed · 4.2-5 to 4.2-6-2

Package Timeline

26 releases. Pick two to compare their code metrics. R releases are shown for context.

4.3-4-6Latest
2026-05-23 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
4.3-4-5
2026-01-30 · diff ↗
4.3-4-4
2026-01-26 · diff ↗
4.3-4-3
2025-12-22 · diff ↗
R
R 4.5.0 released · 2025-04-11
4.2-6-2
2025-01-24 · diff ↗
4.2-5-2
2024-06-14 · diff ↗
4.2-5
2024-05-02 · diff ↗
R
R 4.4.0 released · 2024-04-24
4.2-4
2023-06-16 · diff ↗
4.2-3
2023-05-11 · diff ↗
R
R 4.3.0 released · 2023-04-21
4.2-2
2023-01-16 · diff ↗
4.1-2
2022-10-25 · diff ↗
R
R 4.2.0 released · 2022-04-22

Show 25 earlier events

3.5.1
2021-06-11 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
3.4.6
2020-02-26 · diff ↗
R
R 3.6.0 released · 2019-04-26
3.3-7.1
2019-03-08 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
3.3-7
2016-03-01 · diff ↗
R
R 3.2.0 released · 2015-04-16
3.1-64
2014-12-10 · diff ↗
3.1-48
2014-07-07 · diff ↗
R
R 3.1.0 released · 2014-04-10
3.1-25
2013-12-02 · diff ↗
3.1-24
2013-11-25 · diff ↗
3.1-18
2013-10-25 · diff ↗
R
R 3.0.0 released · 2013-04-03
2.1.15
2013-03-14 · diff ↗
2.1.7
2013-02-25 · diff ↗
2.0.0
2013-02-02 · diff ↗
1.3.5
2012-11-14 · diff ↗
1.3.1
2012-11-09 · diff ↗
2.15.2
2012-09-14
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-11-09
Total releases: 26 / 14 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1
Bundled data: 299 KB / 7 files
Download size: 4.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("biomod2")

Format

Guéguen, M., Blancheteau, H., Lemaire-Patin, R., & Thuiller, W. (2026). biomod2: Ensemble Platform for Species Distribution Modeling (Version 4.3-4-6) [Computer software]. https://doi.org/10.32614/CRAN.package.biomod2

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for biomod2 version 4.3-4-6 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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