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bigsparser

Sparse Matrix Format with Data on Disk

v0.7.3 · Sep 6, 2024 · GPL-3
CRAN GitHub Mirror

Description

Provide a sparse matrix format with data stored on disk, to be used in both R and C++. This is intended for more efficient use of sparse data in C++ and also when parallelizing, since data on disk does not need copying. Only a limited number of features will be implemented. For now, conversion can be performed from a 'dgCMatrix' or a 'dsCMatrix' from R package 'Matrix'. A new compact format is also now available.

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CRAN Check Status

4 NOTE
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (4 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘bigsparser/libs/bigsparser.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘bigsparser/libs/bigsparser.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-windows-x86_64

compiled code

File 'bigsparser/libs/x64/bigsparser.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
NOTE r-patched-linux-x86_64

compiled code

File ‘bigsparser/libs/bigsparser.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Check History

NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 27, 2026
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘bigsparser/libs/bigsparser.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

imports

bigsnpr

linking_to

bigsnpr

Dependency Network

Dependencies Reverse dependencies Rcpp bigassertr Matrix rmio bigsnpr bigsparser

Version History

new 0.7.3 Mar 10, 2026
updated 0.7.3 ← 0.7.1 diff Sep 5, 2024
updated 0.7.1 ← 0.6.1 diff May 30, 2024
updated 0.6.1 ← 0.6.0 diff Jun 6, 2022
updated 0.6.0 ← 0.5.0 diff Feb 21, 2022
updated 0.5.0 ← 0.4.4 diff Jul 8, 2021
updated 0.4.4 ← 0.4.1 diff Mar 26, 2021
updated 0.4.1 ← 0.4.0 diff Jan 6, 2021
updated 0.4.0 ← 0.3.1 diff Aug 23, 2020
updated 0.3.1 ← 0.2.3 diff Jul 25, 2020
updated 0.2.3 ← 0.2.2 diff Jul 2, 2020
updated 0.2.2 ← 0.2.0 diff Jun 28, 2020
updated 0.2.0 ← 0.1.0 diff May 24, 2020
new 0.1.0 Apr 9, 2020