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bigstatsr

Statistical Tools for Filebacked Big Matrices

v1.6.2 · Jul 29, 2025 · GPL-3
CRAN GitHub Mirror

Description

Easy-to-use, efficient, flexible and scalable statistical tools. Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping. It provides for instance matrix operations, Principal Component Analysis, sparse linear supervised models, utility functions and more <doi:10.1093/bioinformatics/bty185>.

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CRAN Check Status

6 NOTE
8 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (6 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘bigstatsr/libs/bigstatsr.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘bigstatsr/libs/bigstatsr.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-windows-x86_64

compiled code

File 'bigstatsr/libs/x64/bigstatsr.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
NOTE r-oldrel-macos-arm64

installed package size

installed size is 13.6Mb
  sub-directories of 1Mb or more:
    extdata   2.3Mb
    libs     10.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.4Mb
  sub-directories of 1Mb or more:
    extdata   2.3Mb
    libs      9.4Mb
NOTE r-patched-linux-x86_64

compiled code

File ‘bigstatsr/libs/bigstatsr.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 13.6Mb
  sub-directories of 1Mb or more:
    extdata   2.3Mb
    libs     10.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.4Mb
  sub-directories of 1Mb or more:
    extdata   2.3Mb
    libs      9.4Mb

Reverse Dependencies (11)

depends

bigsnpr

imports

Compositional Directional HDBRR dartR.base iPRSue neuroim2 pchc tidypopgen

linking_to

bigsnpr tidypopgen

suggests

plmmr uwot

Dependency Network

Dependencies Reverse dependencies bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp rmio RSpectra tibble bigsnpr Compositional Directional HDBRR dartR.base iPRSue neuroim2 pchc tidypopgen plmmr uwot bigstatsr

Version History

new 1.6.2 Mar 10, 2026
updated 1.6.2 ← 1.6.1 diff Jul 28, 2025
updated 1.6.1 ← 1.5.12 diff Sep 8, 2024
updated 1.5.12 ← 1.5.6 diff Oct 13, 2022
updated 1.5.6 ← 1.5.5 diff Feb 2, 2022
updated 1.5.5 ← 1.5.1 diff Nov 30, 2021
updated 1.5.1 ← 1.5.0 diff Apr 4, 2021
updated 1.5.0 ← 1.3.1 diff Mar 28, 2021
updated 1.3.1 ← 1.2.3 diff Nov 5, 2020
updated 1.2.3 ← 1.2.2 diff Mar 11, 2020
updated 1.2.2 ← 1.1.4 diff Mar 8, 2020
updated 1.1.4 ← 1.1.2 diff Jan 31, 2020
updated 1.1.2 ← 1.0.1 diff Jan 18, 2020
updated 1.0.1 ← 0.9.1 diff Dec 19, 2019
updated 0.9.1 ← 0.6.2 diff Mar 2, 2019
updated 0.6.2 ← 0.2.4 diff Aug 16, 2018
updated 0.2.4 ← 0.2.3 diff Jan 31, 2018
updated 0.2.3 ← 0.2.2 diff Nov 29, 2017
new 0.2.1 Sep 1, 2017
updated 0.2.2 ← 0.2.1 diff Sep 1, 2017