pcadapt
Fast Principal Component Analysis for Outlier Detection
v4.4.1
·
Jul 25, 2025
·
GPL (>= 2)
Description
Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <DOI:10.1093/molbev/msaa053>.
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CRAN Check Status
6
NOTE
8
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (6 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
compiled code
File ‘pcadapt/libs/pcadapt.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
NOTE
r-devel-linux-x86_64-debian-gcc
compiled code
File ‘pcadapt/libs/pcadapt.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
NOTE
r-devel-windows-x86_64
compiled code
File 'pcadapt/libs/x64/pcadapt.dll': Found non-API call to R: 'R_UnboundValue' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.4Mb
sub-directories of 1Mb or more:
extdata 2.7Mb
libs 3.0Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
extdata 2.7Mb
libs 2.8Mb
NOTE
r-patched-linux-x86_64
compiled code
File ‘pcadapt/libs/pcadapt.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.4Mb
sub-directories of 1Mb or more:
extdata 2.7Mb
libs 3.0Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
extdata 2.7Mb
libs 2.8Mb
Reverse Dependencies (1)
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Dependency Network
Version History
new
4.4.1
Mar 10, 2026