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pcadapt

Fast Principal Component Analysis for Outlier Detection

v4.4.1 · Jul 25, 2025 · GPL (>= 2)
CRAN GitHub Mirror

Description

Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <DOI:10.1093/molbev/msaa053>.

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CRAN Check Status

13 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.8Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/pcadapt.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.8Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.8Mb

Reverse Dependencies (2)

suggests

bigsnpr tidypopgen

Dependency Network

Dependencies Reverse dependencies bigutilsr data.table ggplot2 magrittr mmapcharr Rcpp RSpectra bigsnpr tidypopgen pcadapt

Version History

21 tracked
new 4.4.1 Mar 10, 2026
updated 4.4.1 ← 4.4.0 diff Jul 24, 2025
updated 4.4.0 ← 4.3.5 diff Sep 23, 2024
updated 4.3.5 ← 4.3.3 diff Aug 28, 2023
updated 4.3.3 ← 4.3.1 diff May 4, 2020
updated 4.3.1 ← 4.1.0 diff Feb 27, 2020
updated 4.1.0 ← 4.0.3 diff Feb 26, 2019
updated 4.0.3 ← 4.0.1 diff Jul 2, 2018
updated 4.0.1 ← 4.0.0 diff Apr 12, 2018
updated 4.0.0 ← 3.0.4 diff Apr 4, 2018
updated 3.0.4 ← 3.0.3 diff Jan 1, 2017
updated 3.0.3 ← 3.0.2 diff Nov 2, 2016
updated 3.0.2 ← 3.0.1 diff Jun 20, 2016
updated 3.0.1 ← 3.0 diff Jun 13, 2016
updated 3.0 ← 2.2 diff Apr 14, 2016