R Observatory: Metrics for HiResTEC version 0.63.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HiResTEC

0.63.1Package record

Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data

1packages depend

3.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Jan LisecCRAN page ↗GitHub ↗Website ↗

Identifying labeled compounds in a 13C-tracer experiment in non-targeted fashion is a cumbersome process. This package facilitates such type of analyses by providing high level quality control plots, deconvoluting and evaluating spectra and performing a multitude of tests in an automatic fashion. The main idea is to use changing intensity ratios of ion pairs from peak list generated with 'xcms' as candidates and evaluate those against base peak chromatograms and spectra information within the raw measurement data automatically. The functionality is described in Hoffmann et al. (2018) doi:10.1021/acs.analchem.8b00356.

Changes in 0.63.1

Using pkgdown to show vignette directly on the github page
Improved documentation by bringing back examples to help files

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("HiResTEC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/HiResTEC")

Development version from janlisec/HiResTEC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hirestec

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HiResTEC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.6 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.63.1

READMEYes · 139 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.63.1Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 9
Examples that run: 86%6 run in a plain check · 1 never run
Exported functions with examples: 88%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 11%

Vignettes (1)

HiResTEC-workflow HTML

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #9,712 · ~9/day · ~282/mo

Releases R versions

Daily download trend is not available in this view yet.

37330 days

1K90 days

3.4K1 year

Compare downloads with other packages →

Also on439 r2u7 autocran

How downloads are counted

Repository

janlisec/hirestec ↗Account: janlisec

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-09-17 · Default branch at 0.63.2, ahead of CRAN 0.63.1 (checked 2026-10-21)

Responsiveness

not measured

How these are measured

PracticesBeta

8 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/janlisec/hirestec on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2025-09-17 · The repository has a site deploy workflow

pkgdown site last built 2025-09-17

Reproducibility and dev environment (1)

renv

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing HiResTEC adds 3 packages (2 with compiled code, 2.7 MB of source tarballs). Heaviest: Rcpp 1.8 MB, CorrectOverloadedPeaks 489 KB, plyr 392 KB.

Depends (1)

R >= 3.5

Imports (2)

CorrectOverloadedPeaks plyr

LinkingTo (0)

none

Suggests (6)

beeswarm CorMID InterpretMSSpectrum knitr openxlsx rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

MetabolomicsBasics

How these are counted

Code & Tests

Datasets

People & History

People (2)

Jan Lisec

Author, Maintainer since 0.52 (2018)

Friederike Hoffmann

Author

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.63.1Latest
record
2025-02-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
0.62.3
record
2024-02-26 · diff ↗ ·
removed 2 exports
CalcTheoreticalMDV, CorMID
R
R 4.3.0 released · 2023-04-21
0.62
record
2023-02-22 · diff ↗ ·
removed 1 export
CalcMID

added 1 export
CorMID
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.59
record
2019-06-18 · diff ↗
unarchivedReturned to CRAN
2019-06-13
0.58
record
2019-06-13 · diff ↗
archivedRemoved from CRAN
2019-06-02
requires non-portable package 'mzR' from BioC via 'xcms'
R
R 3.6.0 released · 2019-04-26
0.54
record
2018-08-07 · diff ↗

Show 2 earlier eventsHide 2 earlier events

0.52
record
2018-05-07
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-07
Total releases: 7 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 1.9 MB / 5 files
Download size: 2.1 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("HiResTEC")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HiResTEC version 0.63.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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