R Observatory: Metrics for HiResTEC version 0.63.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HiResTEC

0.63.1

Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data

1packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jan LisecFirst published 2018-05-077 releasesCRAN page ↗GitHub ↗

Identifying labeled compounds in a 13C-tracer experiment in non-targeted fashion is a cumbersome process. This package facilitates such type of analyses by providing high level quality control plots, deconvoluting and evaluating spectra and performing a multitude of tests in an automatic fashion. The main idea is to use changing intensity ratios of ion pairs from peak list generated with 'xcms' as candidates and evaluate those against base peak chromatograms and spectra information within the raw measurement data automatically. The functionality is described in Hoffmann et al. (2018) doi:10.1021/acs.analchem.8b00356.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("HiResTEC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/HiResTEC")

Development version from janlisec/HiResTEC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hirestec

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HiResTEC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 139 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 86%
Documented parameters: 100%
Return-value docs: 100%
References docs: 11%

Downloads

3.1K

CRAN downloads in the past year

Rank #12,545 · ~8/day · ~255/mo

Releases R versions

Daily download trend is not available in this view yet.

22230 days

79690 days

3.1K1 year

Compare downloads with other packages →

Also on475 r2u24 autocran

Repository

GitHub ↗ janlisec/hirestec

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-09-17

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/janlisec/hirestec on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

renv

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (2)

CorrectOverloadedPeaks plyr

LinkingTo (0)

none

Suggests (6)

beeswarm CorMID InterpretMSSpectrum knitr openxlsx rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

MetabolomicsBasics

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Jan Lisec

Author, Maintainer

Authors (2)

Jan Lisec

Author, Maintainer

Friederike Hoffmann

Author

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.63.1Latest
2025-02-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
0.62.3
2024-02-26 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.62
2023-02-22 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.59
2019-06-18 · diff ↗
0.58
2019-06-13 · diff ↗
unarchivedReturned to CRAN
2019-06-13
archivedRemoved from CRAN
2019-06-02
requires non-portable package 'mzR' from BioC via 'xcms'
R
R 3.6.0 released · 2019-04-26
0.54
2018-08-07 · diff ↗

Show 2 earlier events

0.52
2018-05-07
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-07
Total releases: 7 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 1.9 MB / 5 files
Download size: 2.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HiResTEC")

Format

Lisec, J., & Hoffmann, F. (2025). HiResTEC: Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data (Version 0.63.1) [Computer software]. https://doi.org/10.32614/CRAN.package.HiResTEC

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HiResTEC version 0.63.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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