R Observatory: Metrics for CorMID version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CorMID

0.3.1

Correct Mass Isotopologue Distribution Vectors

1packages depend

2.9Kdownloads / year

83.7%test coverage

13/13checks pass

Overview

About

Maintained by Jan LisecFirst published 2022-03-306 releasesCRAN page ↗GitHub ↗

In metabolic flux experiments tracer molecules (often glucose containing labelled carbon) are incorporated in compounds measured using mass spectrometry. The mass isotopologue distributions of these compounds needs to be corrected for natural abundance of labelled carbon and other effects, which are specific on the compound and ionization technique applied. This package provides functions to correct such effects in gas chromatography atmospheric pressure chemical ionization mass spectrometry analyses.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CorMID", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/CorMID")

Development version from janlisec/CorMID. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cormid

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CorMID

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CorMID

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.0 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.51

83.7%

Coverage · measured lines

100%

Documentation · exports

1

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 459 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 11%

Downloads

2.9K

CRAN downloads in the past year

Rank #14,577 · ~8/day · ~240/mo

Releases R versions

Daily download trend is not available in this view yet.

16730 days

71090 days

2.9K1 year

Compare downloads with other packages →

Also on388 r2u27 autocran

Repository

GitHub ↗ janlisec/cormid

0Stars

1Forks

0Open issues

0Open PRs

0Releases

38Commits

2Contributors

License GPL-3.0 · 38 commits · Last activity 2025-01-17

Forks over time

2024-10-15 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/janlisec/cormid on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (1)

Rcpp

LinkingTo (1)

Rcpp

Suggests (5)

knitr Rdisop rmarkdown testthat vdiffr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

HiResTEC

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Jan Lisec

Author, Maintainer

Authors (1)

Jan Lisec

Author, Maintainer

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.3.1Latest
2025-01-09 · current release · diff ↗
0.2.1
2024-10-02 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.9
2023-08-10 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.7
2022-12-01 · diff ↗
0.1.6
2022-05-03 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.4
2022-03-30
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-03-30
Total releases: 6 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 35 KB / 4 files
Download size: 98 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CorMID")

Format

Lisec, J. (2025). CorMID: Correct Mass Isotopologue Distribution Vectors (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.CorMID

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CorMID version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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