R Observatory: Metrics for CorrectOverloadedPeaks version 1.3.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CorrectOverloadedPeaks

1.3.5Package record

Correct Overloaded Peaks from GC-APCI-MS Data

1packages depend

3.3Kdownloads / year

0.0%test coverage

13/13flavors OK

Overview

About

Maintained by Jan LisecCRAN page ↗GitHub ↗Issues ↗

Analyzes and modifies metabolomics raw data (generated using Gas Chromatography-Atmospheric Pressure Chemical Ionization-Mass Spectrometry) to correct overloaded signals, i.e. ion intensities exceeding detector saturation leading to a cut-off peak. Data in 'xcmsRaw' format are accepted as input and 'mzXML' files can be processed alternatively. Overloaded signals are detected automatically and modified using an Gaussian or an Isotopic-Ratio approach. Quality control plots are generated and corrected data are stored within the original 'xcmsRaw' or 'mzXML' respectively to allow further processing.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CorrectOverloadedPeaks", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/CorrectOverloadedPeaks")

Development version from janlisec/CorrectOverloadedPeaks. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-correctoverloadedpeaks

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CorrectOverloadedPeaks

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CorrectOverloadedPeaks

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.5

READMEYes · 247 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 8
Examples that run: 40%2 run in a plain check · 3 never run
Exported functions with examples: 71%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 13%

Vignettes (1)

CorrectOverloadedPeaks: a computational tool for automatic correction of overloaded signals in GC-APCI-MS

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #10,095 · ~9/day · ~277/mo

Releases R versions

Daily download trend is not available in this view yet.

36030 days

1K90 days

3.3K1 year

Compare downloads with other packages →

Also on171 r2u6 autocran

How downloads are counted

Repository

janlisec/correctoverloadedpeaks ↗Account: janlisec

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-02-27 · Default branch at 1.3.6, ahead of CRAN 1.3.5 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: not measured

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/janlisec/correctoverloadedpeaks on 2026-10-21.

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing CorrectOverloadedPeaks adds no packages beyond those that come with R.

Depends (1)

R >= 2.10.0

Imports (1)

methods

LinkingTo (0)

none

Suggests (8)

bitops digest knitr rmarkdown spelling xcms XML xml2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

1indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

HiResTEC

How these are counted

Code & Tests

Datasets

People & History

People (1)

Jan Lisec

Author, Maintainer since 1.2.13 (2016)

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.3.5Latest
record
2025-02-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.3.3
record
2023-09-08 · diff ↗ ·
added 3 exports
base64decode, base64encode, read.mzData
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
unarchivedReturned to CRAN
2019-07-23
1.2.17
record
2019-07-23 · diff ↗
archivedRemoved from CRAN
2019-06-02
requires non-portable package 'xcms' (requires 'mzR') used unconditionally
1.2.16
record
2019-05-15 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.2.15
record
2018-07-10 · diff ↗
R
R 3.5.0 released · 2018-04-23

Show 4 earlier eventsHide 4 earlier events

R
R 3.4.0 released · 2017-04-21
1.2.14
record
2016-08-30 · diff ↗
1.2.13
record
2016-07-22
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-07-22
Total releases: 7 / 10 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10.0
Bundled data: 410 KB / 1 file
Download size: 489 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("CorrectOverloadedPeaks")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1021/acs.analchem.6b02515.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CorrectOverloadedPeaks version 1.3.5 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →