R Observatory: Metrics for InterpretMSSpectrum version 1.5.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

InterpretMSSpectrum

1.5.3Package record

Interpreting High Resolution Mass Spectra

2packages dependsuggested by 1

5.9Kdownloads / year

49.0%test coverage

13/13flavors OK

Overview

About

Maintained by Jan LisecCRAN page ↗GitHub ↗

High resolution mass spectrometry yields often large data sets of spectra from compounds which are not present in available libraries. These spectra need to be annotated and interpreted. 'InterpretMSSpectrum' provides a set of functions to perform such tasks for Electrospray-Ionization and Atmospheric-Pressure-Chemical-Ionization derived data in positive and negative ionization mode.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("InterpretMSSpectrum", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/InterpretMSSpectrum")

Development version from janlisec/InterpretMSSpectrum. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-interpretmsspectrum

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-InterpretMSSpectrum

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE13 OK, 1 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.5.3

READMEYes · 283 wordsVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 22 (1 internal)
Examples that run: 73%8 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 2 never run
Exported functions with examples: 79%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 9%

How these are measured

Downloads

5.9K

CRAN downloads in the past year

Rank #5,126 · ~16/day · ~491/mo

Releases R versions

Daily download trend is not available in this view yet.

67230 days

1.6K90 days

5.9K1 year

Compare downloads with other packages →

Also on170 r2u4 autocran973 conda_forge391 bioconda51 c2d4u

How downloads are counted

Repository

janlisec/interpretmsspectrum ↗Account: janlisec

3Stars

0Forks

0Open issues

0Open PRs

0Releases

43Commits

1Commit identities

43 commits · Last activity 2026-04-10

Responsiveness

not measured

Stars over time

2025-04-29 · 32026-07-07 · 3

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/janlisec/interpretmsspectrum on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

Coverage (1)

Coverage reporting

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing InterpretMSSpectrum adds 10 packages (6 with compiled code, 23 MB of source tarballs). Heaviest: rcdklibs 19 MB, Rcpp 1.8 MB, rJava 624 KB.

Depends (1)

R >= 2.10.0

Imports (3)

enviPat plyr rcdk

LinkingTo (0)

none

Suggests (8)

DBI doParallel foreachparallelRdisop RSQLite testthat vdiffr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

Imports 2

Suggested by 1

Depends, Imports or LinkingTo, most downloaded first

MetabolomicsBasics fioRa

Suggests, most downloaded first

HiResTEC

How these are counted

Code & Tests

Datasets

People & History

People (2)

Jan Lisec

Author, Maintainer since 0.83 (2016)

Jaeger Carsten

Author · added in 1.3.3

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.5.3Latest
record
2025-12-03 · current release · diff ↗
1.5.2
record
2025-12-03 · diff ↗ ·
added 1 export
fml2expr
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.4.5
record
2024-01-31 · diff ↗ ·
removed 1 export
PlausibleFormula

added 2 exports
InterpretTP, ReadSpecClipboard
1.3.8
record
2023-07-07 · diff ↗ ·
added 1 export
get_exactmass
R
R 4.3.0 released · 2023-04-21
1.3.3
record
2022-11-15 · diff ↗ ·
removed 1 export
getRuleFromIonSymbol
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.2
record
2018-05-03 · diff ↗ ·
added 2 exports
CountChemicalElements, GetGroupFactor
R
R 3.5.0 released · 2018-04-23
1.1
record
2017-09-20 · diff ↗

Show 4 earlier eventsHide 4 earlier events

1.0
record
2017-05-10 · diff ↗ ·
added 6 exports
GenerateMetaboliteSQLiteDB, IMS_parallel, findMAIN, getRuleFromIonSymbol, sendToMSF, writeMSF
R
R 3.4.0 released · 2017-04-21
0.83
record
2016-09-06
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-09-06
Total releases: 9 / 10 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10.0
Bundled data: 213 KB / 8 files
Download size: 401 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("InterpretMSSpectrum")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for InterpretMSSpectrum version 1.5.3 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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