R Observatory: Metrics for InterpretMSSpectrum version 1.5.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

InterpretMSSpectrum

1.5.3

Interpreting High Resolution Mass Spectra

3packages depend

5.2Kdownloads / year

49.0%test coverage

13/13checks pass

Overview

About

Maintained by Jan LisecFirst published 2016-09-069 releasesCRAN page ↗GitHub ↗

High resolution mass spectrometry yields often large data sets of spectra from compounds which are not present in available libraries. These spectra need to be annotated and interpreted. 'InterpretMSSpectrum' provides a set of functions to perform such tasks for Electrospray-Ionization and Atmospheric-Pressure-Chemical-Ionization derived data in positive and negative ionization mode.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("InterpretMSSpectrum", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("janlisec/InterpretMSSpectrum")

Development version from janlisec/InterpretMSSpectrum. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-interpretmsspectrum

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-InterpretMSSpectrum

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.25

49.0%

Coverage · measured lines

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 283 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 73%
Documented parameters: 100%
Return-value docs: 100%
References docs: 9%

Downloads

5.2K

CRAN downloads in the past year

Rank #5,430 · ~14/day · ~436/mo

Releases R versions

Daily download trend is not available in this view yet.

27830 days

1.4K90 days

5.2K1 year

Compare downloads with other packages →

Also on196 r2u17 autocran1K conda_forge334 bioconda29 c2d4u

Repository

GitHub ↗ janlisec/interpretmsspectrum

3Stars

0Forks

0Open issues

0Open PRs

0Releases

43Commits

1Contributors

43 commits · Last activity 2026-04-10

Stars over time

2025-04-29 · 32026-07-07 · 3

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/janlisec/interpretmsspectrum on 2026-08-16.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10.0

Imports (3)

enviPat plyr rcdk

LinkingTo (0)

none

Suggests (8)

DBI doParallel foreachparallelRdisop RSQLite testthat vdiffr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

MetabolomicsBasics fioRa HiResTEC

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Jan Lisec

Author, Maintainer

Authors (2)

Jan Lisec

Author, Maintainer

Jaeger Carsten

Author · added in 1.3.3

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.5.3Latest
2026-04-10 · current release · diff ↗
1.5.2
2025-12-03 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.4.5
2024-01-31 · diff ↗
1.3.8
2023-07-07 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.3.3
2022-11-15 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.2
2018-05-03 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1
2017-09-20 · diff ↗

Show 4 earlier events

1.0
2017-05-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.83
2016-09-06
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-09-06
Total releases: 9 / 10 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10.0
Bundled data: 213 KB / 8 files
Download size: 401 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("InterpretMSSpectrum")

Format

Lisec, J., & Carsten, J. (2026). InterpretMSSpectrum: Interpreting High Resolution Mass Spectra (Version 1.5.3) [Computer software]. https://doi.org/10.32614/CRAN.package.InterpretMSSpectrum

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for InterpretMSSpectrum version 1.5.3 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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