Q4 2011 in CRAN

Part of 2011.

Final

109

New packages

604

Updated

Archived

+92

Net growth

New packages (60+)

weightedScores Weighted Scores Method for Regression Models with Dependent Data	2011-10-01
conjoint An Implementation of Conjoint Analysis Method	2011-10-02
lgcp Log-Gaussian Cox Process	2011-10-02
survC1 C-Statistics for Risk Prediction Models with Censored Survival Data	2011-10-02
rococo Robust Rank Correlation Coefficient and Test	2011-10-03
cccrm Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures	2011-10-04
rsem Robust Structural Equation Modeling with Missing Data and Auxiliary Variables	2011-10-04
alphashape3d Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud	2011-10-05
psychomix Psychometric Mixture Models	2011-10-05
psychotools Psychometric Modeling Infrastructure	2011-10-05
ROI R Optimization Infrastructure	2011-10-06
ROI.plugin.glpk 'ROI' Plug-in 'GLPK'	2011-10-06
ROI.plugin.quadprog 'quadprog' Plug-in for the 'R' Optimization Infrastructure	2011-10-06
ROI.plugin.symphony 'SYMPHONY' Plug-in for the 'R' Optimization Interface	2011-10-06
capushe Capushe, Data-Driven Slope Estimation and Dimension Jump	2011-10-06
FastRWeb Fast Interactive Framework for Web Scripting Using R	2011-10-08
Rlof R Parallel Implementation of Local Outlier Factor(LOF)	2011-10-08
allelematch Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present	2011-10-08
PhaseType Inference for Phase-Type Distributions	2011-10-12
flip Multivariate Permutation Tests	2011-10-12
pks Probabilistic Knowledge Structures	2011-10-14
SPEI Calculation of the Standardized Precipitation-Evapotranspiration Index	2011-10-18
gridSVG Export 'grid' Graphics as SVG	2011-10-18
logconcens Maximum Likelihood Estimation of a Log-Concave Density Based on Censored Data	2011-10-18
LaF Fast Access to Large ASCII Files	2011-10-19
NMOF Numerical Methods and Optimization in Finance	2011-10-20
HiveR 2D and 3D Hive Plots for R	2011-10-23
etable Easy Table	2011-10-23
pbkrtest Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models	2011-10-23
doRNG Generic Reproducible Parallel Backend for 'foreach' Loops	2011-10-24
treebase Discovery, Access and Manipulation of 'TreeBASE' Phylogenies	2011-10-25
goric Generalized Order-Restricted Information Criterion	2011-10-26
plumbr Mutable and Dynamic Data Models	2011-10-26
rfishbase R Interface to 'FishBase'	2011-10-26
smfsb Stochastic Modelling for Systems Biology	2011-10-26
CDM Cognitive Diagnosis Modeling	2011-10-27
DirichletReg Dirichlet Regression	2011-10-27
GMMBoost Likelihood-Based Boosting for Generalized Mixed Models	2011-10-27
coefplot Plots Coefficients from Fitted Models	2011-10-27
glmmLasso Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation	2011-10-27
useful A Collection of Handy, Useful Functions	2011-10-27
EL Two-Sample Empirical Likelihood	2011-11-02
rationalfun Manipulation of Rational Functions	2011-11-02
sss Import Files in the Triple-s (Standard Survey Structure) Format	2011-11-02
RSKC Robust Sparse K-Means	2011-11-03
rockchalk Regression Estimation and Presentation	2011-11-03
BaSTA Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data	2011-11-05
BinNor Simultaneous Generation of Multivariate Binary and Normal Variates	2011-11-05
HTSCluster Clustering High-Throughput Transcriptome Sequencing (HTS) Data	2011-11-07
cvTools Cross-Validation Tools for Regression Models	2011-11-07
lorec LOw Rand and sparsE Covariance matrix estimation	2011-11-07
Rmosek The R to MOSEK Optimization Interface	2011-11-08
PerfMeas Performance Measures for Ranking and Classification Tasks	2011-11-09
flexsurv Flexible Parametric Survival and Multi-State Models	2011-11-09
recommenderlabBX Book-Crossing Dataset (BX) for 'recommenderlab'	2011-11-10
recommenderlabJester Jester Dataset for 'recommenderlab'	2011-11-10
spider Species Identity and Evolution in R	2011-11-12
mvProbit Multivariate Probit Models	2011-11-13
intRegGOF Integrated Regression Goodness of Fit	2011-11-14
multicool Permutations of Multisets in Cool-Lex Order	2011-11-15

Archived / removed

Why

16 reason not recorded
1 requested by the original maintainer, 'Mehmet Hakan Satman <mhsatman@gmail.com>'. Archived on 2012-07-22 as it violates the CRAN policies in writing to '/tmp' and not cleaning up

SSSR requested by the original maintainer, 'Mehmet Hakan Satman <mhsatman@gmail.com>'. Archived on 2012-07-22 as it violates the CRAN policies in writing to '/tmp' and not cleaning up	2011-12-22
hof	2011-12-02
betfairly	2011-11-29
DPM.GGM	2011-11-25
siatclust	2011-11-20
SNPMaP	2011-11-17
SNPMaP.cdm	2011-11-17
paloma	2011-11-17
dmRTools	2011-11-08
SoPhy	2011-10-27
amba	2011-10-27
gsc	2011-10-27
iv	2011-10-27
mecdf	2011-10-27
mtsc	2011-10-27
ofp	2011-10-27
rrv	2011-10-27

Notable

Major version jumps

RWinEdt 1.8-3→2.0-0 Matrix 0.9996875-3→1.0-0 readMzXmlData 1.3.1→2.0 pec 1.1.1→2.0.8 rrBLUP 1.8→2.0 catR 1.6→2.0 reportr 0.2.0→1.0.0 wgaim 0.99-4.3→1.1 coxphw 1.3→2.11 ensembleBMA 4.5→5.0.1 ptinpoly 1.9→2.0 mixsmsn 0.3-2→1.0-0 yaml 1.2.0→2.0.0 Bergm 1.4→2.0 GenSA 0.99.3→1.0.0 editrules 1.9-0→2.0-0 dti 0.9-6.3→1.0-0 quantreg 3.52→4.76 KernSmoothIRT 1.0→2.0 Rmosek 0.9.5→1.0.2

First-time CRAN authors

Harry Joe ×5 Aristidis K. Nikoloulopoulos ×4 Andrzej Bak Tomasz Bartlomowicz Peter J. Diggle ×2 Barry S. Rowlingson Dominic Schumacher. Benjamin M. Taylor ×3 Martin Krone Josep Lluis Carrasco ×2 Gonzalo Peon Pena ×2 Hannah Frick ×13 Thomas Lafarge Beatriz Pateiro-López ×2 Sylvain Arlot Jean-Patrick Baudry Vincent Brault ×2 Cathy Maugis Bertrand Michel Todd Cross