refGenes_mm9
Gene annotation files for hg19, mm9.
Bundled with ISAnalytics · exported, loads via data()
Class
tibble
tbl_df/tbl/data.frame
Dimensions
24,487 × 12
Missing
0
Format
rda · xz
version 3 · 552 KB
File
data/refGenes_mm9.RData
Fingerprint
753e2ddc
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
name2
character
24,359
0
1 – 19 characters
chrom
character
21
0
1 – 2 characters
strand
character
2
0
1 characters
min_txStartinteger24,243061649 – 196963004mean 7.536e+7
Min.
61649
1st Qu.
36128702
Median
73988824
Mean
7.53604e+7
3rd Qu.
109784412
Max.
196963004
Std. dev
4.46718e+7
Skewness
0.2712
Kurtosis
-0.828
max_txEndinteger24,2160133852 – 197002909mean 7.543e+7
Min.
133852
1st Qu.
36184991
Median
74035668
Mean
7.54318e+7
3rd Qu.
1.09842e+8
Max.
197002909
Std. dev
4.46424e+7
Skewness
0.2725
Kurtosis
-0.8266
minmax_TxLeninteger18,250021 – 40505122mean 7.136e+4
Min.
21
1st Qu.
4281
Median
14449
Mean
71355
3rd Qu.
39887.5
Max.
40505122
Std. dev
774562
Skewness
38.01
Kurtosis
1564
Outliers
2,7480 low · 2748 high
average_TxLennumeric18,504021 – 2270659mean 3.95e+4
Min.
21
1st Qu.
4068.5
Median
13718
Mean
39503.9
3rd Qu.
37128.5
Max.
2270659
Std. dev
89844.7
Skewness
7.373
Kurtosis
86.01
Outliers
2,6350 low · 2635 high
name
character
24,369
0
9 – 12 characters
min_cdsStartinteger24,167061857 – 196967383mean 7.537e+7
Min.
61857
1st Qu.
36150301
Median
73988901
Mean
7.53655e+7
3rd Qu.
109792816
Max.
196967383
Std. dev
4.46716e+7
Skewness
0.2712
Kurtosis
-0.828
max_cdsEndinteger24,119096353 – 197002804mean 7.543e+7
Min.
96353
1st Qu.
36180354
Median
74035615
Mean
7.54291e+7
3rd Qu.
109838037
Max.
197002804
Std. dev
4.46425e+7
Skewness
0.2725
Kurtosis
-0.8266
minmax_CdsLeninteger15,49400 – 40505037mean 6.354e+4
Min.
0
1st Qu.
1005
Median
8850
Mean
63543
3rd Qu.
30582
Max.
40505037
Std. dev
773697
Skewness
38.16
Kurtosis
1573
Zeros
3,599
Outliers
2,8130 low · 2813 high
average_CdsLennumeric15,70000 – 2055883mean 3.159e+4
Min.
0
1st Qu.
961.833
Median
7982
Mean
31585.1
3rd Qu.
27710
Max.
2055883
Std. dev
82005.3
Skewness
7.71
Kurtosis
89.17
Zeros
3,768
Outliers
2,6880 low · 2688 high
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.22 | 2026-01-27 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.21 | 2025-04-15 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.20 | 2024-12-05 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.19 | 2024-04-30 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.18 | 2023-10-24 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.17 | 2023-07-24 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.16 | 2023-04-03 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.15 | 2022-05-23 | 24,487 × 12 | Unchanged | rda · xz version 3 · 552 KB | exact |
| 3.14 | 2022-01-13 | 24,487 × 12 | – | rda · xz version 3 · 552 KB | exact |