refGenes_hg19
Gene annotation files for hg19, mm9.
Bundled with ISAnalytics · exported, loads via data()
Class
tibble
tbl_df/tbl/data.frame
Dimensions
27,275 × 12
Missing
0
Format
rda · xz
version 3 · 601 KB
File
data/refGenes_hg19.RData
Fingerprint
3908abd1
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
name2
character
27,152
0
1 – 25 characters
chrom
character
25
0
1 – 2 characters
strand
character
2
0
1 characters
min_txStartinteger26,8650649 – 249200441mean 7.414e+7
Min.
649
1st Qu.
30721943
Median
58390145
Mean
7.41376e+7
3rd Qu.
110915288
Max.
249200441
Std. dev
5.5938e+7
Skewness
0.8495
Kurtosis
0.0892
Outliers
3240 low · 324 high
max_txEndinteger26,80901603 – 249213345mean 7.425e+7
Min.
1603
1st Qu.
3.07764e+7
Median
58593835
Mean
7.42538e+7
3rd Qu.
111117727
Max.
249213345
Std. dev
5.59487e+7
Skewness
0.8487
Kurtosis
0.0879
Outliers
3150 low · 315 high
minmax_TxLeninteger20,728020 – 219683770mean 1.162e+5
Min.
20
1st Qu.
4573
Median
17319
Mean
116230
3rd Qu.
52450.5
Max.
219683770
Std. dev
2.17503e+6
Skewness
68.09
Kurtosis
5623
Outliers
3,0640 low · 3064 high
average_TxLennumeric21,295020 – 2320934mean 4.596e+4
Min.
20
1st Qu.
4162
Median
15473
Mean
45960.2
3rd Qu.
46028.6
Max.
2320934
Std. dev
96651.4
Skewness
6.7
Kurtosis
76.96
Outliers
2,8450 low · 2845 high
name
character
27,165
0
9 – 12 characters
min_cdsStartinteger26,86001603 – 249208061mean 7.415e+7
Min.
1603
1st Qu.
30722515
Median
58393205
Mean
7.41471e+7
3rd Qu.
1.10927e+8
Max.
249208061
Std. dev
5.5939e+7
Skewness
0.8494
Kurtosis
0.0891
Outliers
3240 low · 324 high
max_cdsEndinteger26,82801603 – 249212562mean 7.425e+7
Min.
1603
1st Qu.
3.0776e+7
Median
58587785
Mean
7.42508e+7
3rd Qu.
111117466
Max.
249212562
Std. dev
5.59487e+7
Skewness
0.8487
Kurtosis
0.0879
Outliers
3150 low · 315 high
minmax_CdsLeninteger16,18300 – 219649451mean 1.037e+5
Min.
0
1st Qu.
0
Median
8182
Mean
103699
3rd Qu.
36682
Max.
219649451
Std. dev
2.17458e+6
Skewness
68.13
Kurtosis
5627
Zeros
7,354
Outliers
3,2200 low · 3220 high
average_CdsLennumeric16,46500 – 2307738mean 3.184e+4
Min.
0
1st Qu.
0
Median
5698
Mean
31839.7
3rd Qu.
28075.2
Max.
2307738
Std. dev
83871.8
Skewness
8.131
Kurtosis
114.9
Zeros
7,939
Outliers
3,1370 low · 3137 high
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.22 | 2026-01-27 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.21 | 2025-04-15 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.20 | 2024-12-05 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.19 | 2024-04-30 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.18 | 2023-10-24 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.17 | 2023-07-24 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.16 | 2023-04-03 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.15 | 2022-05-23 | 27,275 × 12 | Unchanged | rda · xz version 3 · 601 KB | exact |
| 3.14 | 2022-01-13 | 27,275 × 12 | – | rda · xz version 3 · 601 KB | exact |