refGenes_hg38
Reference gene annotation for hg38 or mm10.
Bundled with ISAnalytics · exported, loads via data()
Class
tibble
tbl_df/tbl/data.frame
Dimensions
84,888 × 12
Missing
0
Format
rda · gzip
version 3 · 2.7 MB
File
data/refGenes_hg38.RData
Fingerprint
93a5bf40
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
name2
character
79,127
0
2 – 25 characters
chrom
character
528
0
1 – 20 characters
strand
character
2
0
1 characters
min_txStartinteger84,35900 – 248936580mean 6.819e+7
Min.
0
1st Qu.
2.18885e+7
Median
54284936
Mean
6.81903e+7
3rd Qu.
1.0458e+8
Max.
248936580
Std. dev
5.73528e+7
Skewness
0.8713
Kurtosis
0.1162
Zeros
3
Outliers
1,0870 low · 1087 high
max_txEndinteger84,3500107 – 248937105mean 6.834e+7
Min.
107
1st Qu.
2.2003e+7
Median
54469183
Mean
6.83393e+7
3rd Qu.
104839916
Max.
248937105
Std. dev
5.73923e+7
Skewness
0.869
Kurtosis
0.1114
Outliers
1,0570 low · 1057 high
minmax_TxLeninteger35,90508 – 247090826mean 1.49e+5
Min.
8
1st Qu.
817
Median
4689.5
Mean
149008
3rd Qu.
24799.2
Max.
247090826
Std. dev
3.89608e+6
Skewness
40.16
Kurtosis
1814
Outliers
10,8060 low · 10806 high
average_TxLennumeric44,18708 – 1418360mean 1.67e+4
Min.
8
1st Qu.
796
Median
3812.86
Mean
16698
3rd Qu.
15854.6
Max.
1418360
Std. dev
40615.3
Skewness
8.704
Kurtosis
141.2
Outliers
9,6150 low · 9615 high
name
character
84,888
0
17 – 18 characters
min_cdsStartinteger84,30500 – 248936580mean 6.819e+7
Min.
0
1st Qu.
21888525
Median
54284936
Mean
6.81912e+7
3rd Qu.
1.04584e+8
Max.
248936580
Std. dev
5.73529e+7
Skewness
0.8713
Kurtosis
0.1161
Zeros
2
Outliers
1,0830 low · 1083 high
max_cdsEndinteger84,13700 – 248936580mean 6.833e+7
Min.
0
1st Qu.
2.19982e+7
Median
54462490
Mean
6.8331e+7
3rd Qu.
1.04831e+8
Max.
248936580
Std. dev
5.73915e+7
Skewness
0.8691
Kurtosis
0.1116
Zeros
1
Outliers
1,0570 low · 1057 high
minmax_CdsLeninteger25,43700 – 247090750mean 1.398e+5
Min.
0
1st Qu.
0
Median
0
Mean
139787
3rd Qu.
10777
Max.
247090750
Std. dev
3.89617e+6
Skewness
40.16
Kurtosis
1814
Zeros
43,973
Outliers
13,7540 low · 13754 high
average_CdsLennumeric19,59600 – 1281418mean 5877
Min.
0
1st Qu.
0
Median
0
Mean
5876.74
3rd Qu.
906.111
Max.
1281418
Std. dev
26993
Skewness
14.51
Kurtosis
359.3
Zeros
61,034
Outliers
17,4630 low · 17463 high
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 84,888 × 12 | Unchanged | rda · gzip version 3 · 2.7 MB | exact |
| 3.22 | 2026-01-27 | 84,888 × 12 | – | rda · gzip version 3 · 2.7 MB | exact |