refGenes_mm10
Reference gene annotation for hg38 or mm10.
Bundled with ISAnalytics · exported, loads via data()
Class
tibble
tbl_df/tbl/data.frame
Dimensions
55,316 × 12
Missing
0
Format
rda · gzip
version 3 · 1.7 MB
File
data/refGenes_mm10.RData
Fingerprint
cfa9d4a4
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
name2
character
55,304
0
1 – 16 characters
chrom
character
45
0
1 – 17 characters
strand
character
2
0
1 characters
min_txStartinteger55,26800 – 195321282mean 7.18e+7
Min.
0
1st Qu.
3.47815e+7
Median
68861852
Mean
7.17968e+7
3rd Qu.
104186520
Max.
195321282
Std. dev
4.38877e+7
Skewness
0.3561
Kurtosis
-0.7148
Zeros
1
max_txEndinteger55,240068 – 195323493mean 7.182e+7
Min.
68
1st Qu.
3.48142e+7
Median
6.88861e+7
Mean
7.18204e+7
3rd Qu.
1.04204e+8
Max.
195323493
Std. dev
4.38882e+7
Skewness
0.3561
Kurtosis
-0.7147
minmax_TxLeninteger24,278010 – 4434882mean 2.365e+4
Min.
10
1st Qu.
613
Median
3309
Mean
23654
3rd Qu.
17673.8
Max.
4434882
Std. dev
78198.2
Skewness
13.57
Kurtosis
371.3
Outliers
6,8650 low · 6865 high
average_TxLennumeric27,972010 – 4434882mean 1.487e+4
Min.
10
1st Qu.
610
Median
2920.75
Mean
14865.3
3rd Qu.
12431.2
Max.
4434882
Std. dev
46116.4
Skewness
23.36
Kurtosis
1633
Outliers
6,4470 low · 6447 high
name
character
55,316
0
20 – 21 characters
min_cdsStartinteger55,22200 – 195321282mean 7.18e+7
Min.
0
1st Qu.
3.47815e+7
Median
6.88619e+7
Mean
7.17977e+7
3rd Qu.
104186940
Max.
195321282
Std. dev
4.38878e+7
Skewness
0.3561
Kurtosis
-0.7148
Zeros
1
max_cdsEndinteger55,15500 – 195321282mean 7.182e+7
Min.
0
1st Qu.
3.48115e+7
Median
6.88845e+7
Mean
7.18156e+7
3rd Qu.
1.04203e+8
Max.
195321282
Std. dev
4.38883e+7
Skewness
0.3561
Kurtosis
-0.7147
Zeros
1
minmax_CdsLeninteger17,78500 – 4432540mean 1.79e+4
Min.
0
1st Qu.
0
Median
0
Mean
17904.7
3rd Qu.
8831.5
Max.
4432540
Std. dev
72578.4
Skewness
14.54
Kurtosis
430.5
Zeros
29,678
Outliers
8,8520 low · 8852 high
average_CdsLennumeric18,29200 – 4432540mean 7742
Min.
0
1st Qu.
0
Median
0
Mean
7741.69
3rd Qu.
3540.4
Max.
4432540
Std. dev
36822.6
Skewness
39.73
Kurtosis
3916
Zeros
32,834
Outliers
9,0310 low · 9031 high
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 55,316 × 12 | Unchanged | rda · gzip version 3 · 1.7 MB | exact |
| 3.22 | 2026-01-27 | 55,316 × 12 | – | rda · gzip version 3 · 1.7 MB | exact |