Bioconductor Packages

Annotations for City of Hope CpG Island Analysis Pipeline

Download datasets from EMBL-EBI Expression Atlas

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Example ChIP-Seq data for the MMDiff package

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

expression and copy number data on clear cell renal carcinoma samples

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Example data for the dyebias package, which implements the GASSCO method.

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

DKFZ kidney package

Normalized gene expression dataset published by Wollbold et al. [2009] (WOLLBOLD).

Pre-processed data for use with the sampleClassifier package