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tidySingleCellExperiment

Bioc current

Brings SingleCellExperiment to the Tidyverse

v1.22.0 · software · GPL-3
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

'tidySingleCellExperiment' is an adapter that abstracts the 'SingleCellExperiment' container in the form of a 'tibble'. This allows *tidy* data manipulation, nesting, and plotting. For example, a 'tidySingleCellExperiment' is directly compatible with functions from 'tidyverse' packages `dplyr` and `tidyr`, as well as plotting with `ggplot2` and `plotly`. In addition, the package provides various utility functions specific to single-cell omics data analysis (e.g., aggregation of cell-level data to pseudobulks).

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Topics

Software › AssayDomain
Software › Infrastructure
Software › Technology › Sequencing › RNASeq
Software › BiologicalQuestion › DifferentialExpression
Software › Technology › SingleCell
Software › AssayDomain › GeneExpression
Software › WorkflowStep › Normalization
Software › StatisticalMethod › Clustering
Software › WorkflowStep › QualityControl
Software › Technology › Sequencing

Depended on by (6)

Bioconductor (6)

CuratedAtlasQueryR sccomp tidyomics tidySpatialExperiment OMA spicyWorkflow

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