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sampleClassifier

Bioc current

Sample Classifier

v1.36.0 · software · Artistic-2.0

Release Lineage

Entered 3.5 · Apr 25, 2017

Current · Requires R 4.6

1.0 In 19 of 49 releases 3.23

Description

The package is designed to classify microarray RNA-seq gene expression profiles.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

10 5 exported

Complexity

4.4 avg / 6 max

Call network

10 nodes / 9 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

1,206

Files

19

Compiled share

0%

Has compiled src

No

Language breakdown

R 376 (31.2%)Docs 353 (29.3%)Vignettes 477 (39.6%)

API

Exported functions

5

Internal functions

5

Recent export changes

v3.5+5 classifyProfile, classifyProfile.rnaseq, classifyProfile.svm +2 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.0

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

19

First release

2017-04-24

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.5: 1,205 LOCv3.6: 1,205 LOCv3.7: 1,205 LOCv3.8: 1,206 LOCv3.9: 1,206 LOCv3.10: 1,206 LOCv3.11: 1,206 LOCv3.12: 1,206 LOCv3.13: 1,206 LOCv3.14: 1,206 LOCv3.15: 1,206 LOCv3.16: 1,206 LOCv3.17: 1,206 LOCv3.18: 1,206 LOCv3.19: 1,206 LOCv3.20: 1,206 LOCv3.21: 1,206 LOCv3.22: 1,206 LOCv3.23: 1,206 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo
Examples that run
83%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sampleClassifier")
El Amrani, K. (2026). sampleClassifier: Sample Classifier (Version 1.36.0) [Computer software]. https://bioconductor.org/packages/sampleClassifier

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sampleClassifier version 1.36.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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