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prebs

Bioc current

Probe region expression estimation for RNA-seq data for improved microarray comparability

v1.52.0 · software · Artistic-2.0
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Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using a modified version of RMA algorithm. The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › Microarray
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing
Software › AssayDomain › GeneExpression
Software › WorkflowStep › Preprocessing

People

Karolis Uziela