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postNet

Bioc current

Post-transcriptional network modeling

v1.0.0 · software · MIT + file LICENSE

Release Lineage

Entered 3.23 · Apr 29, 2026

Current · Requires R 4.6

1.0 In 1 of 49 releases 3.23

Description

A tool that enables in silico identification, integration, and modeling of mRNA features that influence post-transcriptional regulation of gene expression at a transcriptome-wide scale.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

200 33 exported

Complexity

6.9 avg / 65 max

Call network

200 nodes / 274 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

25,147

Files

160

Compiled share

8.6%

Has compiled src

Yes

Language breakdown

R 11,434 (45.5%)C/C++/src 2,161 (8.6%)Tests 4,285 (17%)Docs 4,844 (19.3%)Vignettes 2,423 (9.6%)

API

Exported functions

49

Internal functions

116

Recent export changes

v3.23+49 signCalc, slopeFilt, lengthAnalysis +46 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.37

testthat edition

3

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

2.2%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.5.0

System requirements

C++ standard

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

1

First release

2026-04-28

Latest release

2026-04-28

Avg cadence

Cold removal rate

Dep drift

0

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 221 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo
Examples that run
89%
Documented parameters
99%
Return-value docs
100%
References docs
44%

Topics

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("postNet")
Szkop, K., Larsson, O., & Watt, K. (2026). postNet: Post-transcriptional network modeling (Version 1.0.0) [Computer software]. https://bioconductor.org/packages/postNet

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for postNet version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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