permutationResultsForSites

Bundled with methylInheritance · ships in inst/extdata, read by path with system.file()

Class

list

Elements

Missing

Format

rds · xz

version 2 · 515 KB

File

inst/extdata/permutationResultsForSites.RDS

Fingerprint

d3be5552

About this object

The container everything else is built on. What matters about a stored list is usually what is inside it, since a list of three elements can hold thousands of rows. R object catalogue

Structure

Distinct

Nesting depth

Element length

7 – 7

Total length

Elements

Element

Type

Distinct

Missing

Summary

[[1]]

list

nested

Element length

9,864 – 9,864

Total length

69,048

What is inside it

Element

Type

Distinct

Missing

Summary

chr

factor

S9,864

start

numeric

9,864

1000 – 36347198mean 1.921e+7

Min.

1000

1st Qu.

10539107

Median

1.92633e+7

Mean

1.921e+7

3rd Qu.

2.85077e+7

Max.

36347198

Std. dev

1.08184e+7

Skewness

-0.187

Kurtosis

-1.168

Order

ascending

end

numeric

9,864

1000 – 36347198mean 1.921e+7

Min.

1000

1st Qu.

10539107

Median

1.92633e+7

Mean

1.921e+7

3rd Qu.

2.85077e+7

Max.

36347198

Std. dev

1.08184e+7

Skewness

-0.187

Kurtosis

-1.168

Order

ascending

strand

factor

+9,864

pvalue

numeric

9,514

4.6247e-99 – 1mean 0.4589

Min.

4.6247e-99

1st Qu.

0.1507

Median

0.45

Mean

0.4589

3rd Qu.

0.7421

Max.

Std. dev

0.3299

Skewness

0.1406

Kurtosis

-1.302

qvalue

numeric

3,019

4.0633e-95 – 0.8907mean 0.6609

Min.

4.0633e-95

1st Qu.

0.5358

Median

0.8014

Mean

0.6609

3rd Qu.

0.8806

Max.

0.8907

Std. dev

0.2802

Skewness

-1.196

Kurtosis

0.134

Outliers

530530 low · 0 high

meth.diff

numeric

9,360

-65.1645 – 31.9252mean 0.1268

Min.

-65.1645

1st Qu.

-0.5281

Median

Mean

0.1268

3rd Qu.

0.5465

Max.

31.9252

Std. dev

3.371

Skewness

0.1129

Kurtosis

37.12

Zeros

359

Outliers

1,351650 low · 701 high

[[2]]

list

nested

Element length

9,868 – 9,868

Total length

69,076

What is inside it

Element

Type

Distinct

Missing

Summary

chr

factor

S9,868

start

numeric

9,868

1000 – 36347198mean 1.922e+7

Min.

1000

1st Qu.

1.05492e+7

Median

1.92633e+7

Mean

1.92179e+7

3rd Qu.

28510255

Max.

36347198

Std. dev

1.08139e+7

Skewness

-0.1872

Kurtosis

-1.167

Order

ascending

end

numeric

9,868

1000 – 36347198mean 1.922e+7

Min.

1000

1st Qu.

1.05492e+7

Median

1.92633e+7

Mean

1.92179e+7

3rd Qu.

28510255

Max.

36347198

Std. dev

1.08139e+7

Skewness

-0.1872

Kurtosis

-1.167

Order

ascending

strand

factor

+9,868

pvalue

numeric

9,514

5.837e-61 – 1mean 0.4579

Min.

5.837e-61

1st Qu.

0.152

Median

0.4382

Mean

0.4579

3rd Qu.

0.7431

Max.

Std. dev

0.3281

Skewness

0.1506

Kurtosis

-1.306

qvalue

numeric

2,821

5.1589e-57 – 0.8956mean 0.669

Min.

5.1589e-57

1st Qu.

0.5444

Median

0.7847

Mean

0.669

3rd Qu.

0.8872

Max.

0.8956

Std. dev

0.2704

Skewness

-1.184

Kurtosis

0.1958

Outliers

444444 low · 0 high

meth.diff

numeric

9,344

-51.4059 – 42.0505mean -0.0001

Min.

-51.4059

1st Qu.

-0.5458

Median

Mean

-0.0001

3rd Qu.

0.5586

Max.

42.0505

Std. dev

2.7016

Skewness

-0.3675

Kurtosis

46.3

Zeros

361

Outliers

1,226626 low · 600 high

[[3]]

list

nested

Element length

9,858 – 9,858

Total length

69,006

What is inside it

Element

Type

Distinct

Missing

Summary

chr

factor

S9,858

start

numeric

9,858

1000 – 36347198mean 1.924e+7

Min.

1000

1st Qu.

1.05492e+7

Median

19283504

Mean

1.92371e+7

3rd Qu.

2.85227e+7

Max.

36347198

Std. dev

1.08206e+7

Skewness

-0.1899

Kurtosis

-1.169

Order

ascending

end

numeric

9,858

1000 – 36347198mean 1.924e+7

Min.

1000

1st Qu.

1.05492e+7

Median

19283504

Mean

1.92371e+7

3rd Qu.

2.85227e+7

Max.

36347198

Std. dev

1.08206e+7

Skewness

-0.1899

Kurtosis

-1.169

Order

ascending

strand

factor

+9,858

pvalue

numeric

9,486

3.6972e-61 – 1mean 0.4648

Min.

3.6972e-61

1st Qu.

0.1523

Median

0.4612

Mean

0.4648

3rd Qu.

0.7519

Max.

Std. dev

0.3308

Skewness

0.1177

Kurtosis

-1.329

qvalue

numeric

2,732

3.3014e-57 – 0.9058mean 0.6858

Min.

3.3014e-57

1st Qu.

0.5515

Median

0.8353

Mean

0.6858

3rd Qu.

0.9058

Max.

0.9058

Std. dev

0.2773

Skewness

-1.204

Kurtosis

0.1958

Outliers

376376 low · 0 high

meth.diff

numeric

9,309

-52.2745 – 52.0413mean -0.0027

Min.

-52.2745

1st Qu.

-0.5359

Median

Mean

-0.0027

3rd Qu.

0.5311

Max.

52.0413

Std. dev

2.7551

Skewness

0.0579

Kurtosis

57.58

Zeros

380

Outliers

1,267645 low · 622 high

Version history

Version	Released	Rows × Cols	Change	Stored as	Confidence
3.23	2026-04-28	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.22	2025-10-29	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.21	2025-09-22	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.20	2024-10-29	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.19	2024-04-30	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.18	2023-10-24	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.17	2023-04-25	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.16	2022-11-01	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.15	2022-04-26	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.14	2021-10-26	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.13	2021-05-19	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.12	2020-10-27	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.11	2020-04-27	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.10	2019-10-29	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.9	2019-05-02	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.8	2018-12-03	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.7	2018-04-30	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.6	2017-10-30	–	Unchanged	rds · xz version 2 · 515 KB	exact
3.5	2017-04-24	–	–	rds · xz version 2 · 515 KB	exact