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frma

Bioc current

Frozen RMA and Barcode

v1.64.0 · Package record · software · GPL (>= 2)

Release Lineage

Entered 2.6 · Apr 23, 2010

Current · Requires R 4.6

1.0 In 33 of 49 releases 3.23

Description

Preprocessing and analysis for single microarrays and microarray batches.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

13 3 exported

Complexity

9.7 avg / 38 max

Call network

13 nodes / 9 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

1,226

Files

21

Compiled share

0%

Has compiled src

No

Language breakdown

R 690 (56.3%)Docs 244 (19.9%)Vignettes 292 (23.8%)

API

Exported functions

3

Internal functions

10

Testing

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

9.1%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10.0

System requirements

–

C++ standard

–

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

33

First release

2010-04-22

Latest release

2026-04-28

Avg cadence

183 days

Cold removal rate

–

Dep drift

6

LOC over versions

v2.6: 560 LOCv2.7: 484 LOCv2.8: 779 LOCv2.9: 863 LOCv2.10: 874 LOCv2.11: 980 LOCv2.12: 980 LOCv2.13: 980 LOCv2.14: 1,238 LOCv3.0: 1,238 LOCv3.1: 1,640 LOCv3.2: 1,641 LOCv3.3: 1,641 LOCv3.4: 1,641 LOCv3.5: 1,641 LOCv3.6: 1,226 LOCv3.7: 1,226 LOCv3.8: 1,226 LOCv3.9: 1,226 LOCv3.10: 1,226 LOCv3.11: 1,226 LOCv3.12: 1,226 LOCv3.13: 1,226 LOCv3.14: 1,226 LOCv3.15: 1,226 LOCv3.16: 1,226 LOCv3.17: 1,226 LOCv3.18: 1,226 LOCv3.19: 1,226 LOCv3.20: 1,226 LOCv3.21: 1,226 LOCv3.22: 1,226 LOCv3.23: 1,226 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMENoVignettesYes · 1 · dynamicNEWSYesCitation fileYes · cites a publicationWebsiteYes
Help pages
4
Examples that run
100%4 run in a plain check
Exported functions with examples
100%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
0%

Repository practices

Bioconductor git repository

Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.

No development-tooling practices detected in the Bioconductor git repository.

Topics

Maintainer
Matthew N. McCall

Available on

CRANr2uBioconductorautoCRANCOPR

Depended on by (3)

People (from the free-text Author field)

Cite

Cite this package

Run in R for the authors' entry:

citation("frma")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for frma version 1.64.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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