ctgGEM
Bioc removedGenerating Tree Hierarchy Visualizations from Gene Expression Data
Release Lineage
Entered 3.11 · Apr 28, 2020
Removed after 3.16 · Nov 2, 2022
Description
Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.
None published for Bioconductor
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People
- USD Biomedical Engineering author maintainer
- Mark Block author
- Etienne Gnimpieba author
- Mariah Hoffman author
- Carrie Minette author
- Evgeni Radichev author
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