ontologyIndex

Reading Ontologies into R

v2.12 · Feb 26, 2024 · GPL (>= 2)

Description

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

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CRAN Check Status

2 NOTE

12 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	50s
r-devel-linux-x86_64-debian-gcc	NOTE	37.5s
r-devel-linux-x86_64-fedora-clang	OK	74.9s
r-devel-linux-x86_64-fedora-gcc	OK	83.9s
r-devel-macos-arm64	OK	20s
r-devel-windows-x86_64	OK	78s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	47s
r-oldrel-windows-x86_64	OK	82s
r-patched-linux-x86_64	OK	47.9s
r-release-linux-x86_64	OK	46.3s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	56s
r-release-windows-x86_64	OK	68s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.

Reverse Dependencies (9)

depends

ontoFAST

imports

SimReg gsEasy ontologyPlot ontologySimilarity ontophylo rmzqc scOntoMatch

suggests

scDiffCom

Dependency Network

Version History

new 2.12 Mar 10, 2026

updated 2.12 ← 2.11 diff Feb 26, 2024

updated 2.11 ← 2.10 diff May 29, 2023

updated 2.10 ← 2.9 diff Aug 24, 2022

updated 2.9 ← 2.7 diff Aug 14, 2022

updated 2.7 ← 2.5 diff Feb 2, 2021

updated 2.5 ← 2.4 diff Jan 7, 2019

updated 2.4 ← 2.3 diff Feb 5, 2017

updated 2.3 ← 2.2 diff Nov 23, 2016

updated 2.2 ← 2.0 diff Oct 27, 2016

updated 2.0 ← 1.0 diff Aug 2, 2016

new 1.0 Jan 10, 2016