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Bioc currentLoad and Save SummarizedExperiments from File
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
7 4 exported
Complexity
3.7 avg / 9 max
Call network
7 nodes / 1 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,245
Files
23
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
3
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.82
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (6)
Bioconductor (6)
People
- Aaron Lun author maintainer