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Automatic Generation of Differential Expression Analyses

v0.99.2 · MIT + file LICENSE

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Description

Implements pipelines for generating differential expression analysis reports in the augere framework. This includes analyses with edgeR or voom-limma, with a variety of options for contrasts, blocking and covariates. Each pipeline function generates a self-contained Rmarkdown report with all of the steps required to reproduce the DE analysis.

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Topics

Software › WorkflowManagement

Software › WorkflowStep › ReportWriting

Software › BiologicalQuestion › DifferentialExpression

Software › AssayDomain › Transcription

Depended on by (2)

Bioconductor (2)

augere.gsea augere.screen

People

Aaron Lun maintainer author

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