roar
Bioc currentIdentify differential APA usage from RNA-seq alignments
Release Lineage
Entered 2.14 · Apr 14, 2014
Current · Requires R 4.6
Description
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
17 4 exported
Complexity
3.4 avg / 12 max
Call network
17 nodes / 5 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,010
Files
44
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
13
Testing & CI
Has tests
Yes
Test-to-code ratio
0.78
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
11.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0.1
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
25
First release
2014-04-11
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 5%
Topics
Depended on by (1)
Bioconductor (1)
People
Elena Grassi
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("roar")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.