TAPseq
Bioc currentTargeted scRNA-seq primer design for TAP-seq
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
Design primers for targeted single-cell RNA-seq used by TAP-seq. Create sequence templates for target gene panels and design gene-specific primers using Primer3. Potential off-targets can be estimated with BLAST. Requires working installations of Primer3 and BLASTn.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
50 8 exported
Complexity
2.3 avg / 8 max
Call network
50 nodes / 19 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,678
Files
76
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
42
Internal functions
42
Testing & CI
Has tests
Yes
Test-to-code ratio
0.31
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
7.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
2
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-04-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 87%
- Documented parameters
- 88%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Andreas R. Gschwind author maintainer
- Lars M. Steinmetz author
- Lars Velten author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TAPseq")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.