RTDetect
Bioc removedRetrotransposed transcript detection from structural variants
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Description
RTDetect contains functions for detecting retrotransposed transcripts (RTs) from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies RTs by exon-exon junctions and insertion sites. The candidate RTs are reported by events and annotated with information of the inserted transcripts.
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- Ruining Dong author maintainer
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