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affySpikeIn

Gene expression data from the Affymetrix spike-in experiment

Bundled with ROTS · exported, loads via data()

Class
matrix
Dimensions
1,000 × 10
Missing
0
Format
rda · gzip
version 2 · 81 KB
File
data/affySpikeIn.RData
Fingerprint
2122f5a8
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
10,000
Missing
0
Min.
3.11177
1st Qu.
4.43446
Median
5.64808
Mean
5.84429
3rd Qu.
6.86746
Max.
13.957
Std. dev
1.73771
Distinct
10,000
Skewness
1.041
Kurtosis
1.718
Outliers
192 0 low · 192 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows3.23264.4395.64665.84436.873913.8921.7322
Columns5.83785.84355.84485.84435.84575.84980.0032803

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
Rows1392_at, 36092_at, 37507_i_at, 35011_at, 41327_at, 33632_g_at, 37820_at, 1269_at, 38221_at, 32119_at, 39875_at, 38116_at, …1,000
ColumnsX1521m99hpp.av06.CEL, X1521n99hpp.av06.CEL, X1521o99hpp.av06.CEL, X1521p99hpp.av06.CEL, X1532m99hpp.av04.CEL, X1521q99hpp.av06.CEL, X1521r99hpp.av06.CEL, X1521s99hpp.av06.CEL, X1521t99hpp.av06.CEL, X1532q99hpp.av04.CEL10
Columns

This object is 10 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

21 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 10 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-281,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.222025-10-291,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.212025-04-151,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.202024-10-291,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.192024-04-301,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.182023-10-241,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.172023-04-251,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.162022-11-011,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.152022-04-261,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.142021-10-261,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.132021-05-191,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.122020-10-271,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.112020-04-271,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.102019-10-291,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.92019-05-021,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.82019-01-041,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.72018-04-301,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.62017-10-301,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.52017-04-241,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.42016-10-171,000 × 10Unchangedrda · gzip
version 2 · 81 KB
exact
3.32016-05-031,000 × 10–rda · gzip
version 2 · 81 KB
exact

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