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scrna

Data to test scMOSim

Bundled with MOSim · exported, loads via data()

Class
matrix
Dimensions
36,601 × 40
Missing
0
Format
rda · bzip2
version 2 · 206 KB
File
data/scrna.rda
Fingerprint
16479a5b
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
1,464,040
Missing
0
Min.
0
1st Qu.
0
Median
0
Mean
0.123728
3rd Qu.
0
Max.
490
Std. dev
1.62209
Distinct
151
Skewness
94.25
Kurtosis
1.502e+4
Whole numbers
Yes
Zeros
1,383,908 94.5%
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows0000.123730.05161.471.3176
Columns0.0330050.0772720.0921830.123730.171120.278050.064454

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
RowsMIR1302-2HG, FAM138A, OR4F5, AL627309.1, AL627309.3, AL627309.2, AL627309.5, AL627309.4, AP006222.2, AL732372.1, OR4F29, AC114498.1, …36,601
ColumnsAAACATGCAGCAAGTG-1, AAAGGCTCACAGCCAT-1, AACCGCTCATCTAGCA-1, AAGCTAGAGTTCCTGC-1, AAGCTATGTGCTGGTG-1, AAGCTCCCAGATAGAC-1, AAGGTCAAGCCTAACG-1, AAGGTCAAGGAAGTAT-1, AAGTTTGTCACATTGA-1, AATTTGCCAATACTGT-1, AAACCGGCATAATCAC-1, AAAGCACCATTGTGGC-1, …40
Columns

This object is 40 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

5 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 40 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2836,601 × 40Unchangedrda · bzip2
version 2 · 206 KB
exact
3.222026-03-2436,601 × 40Unchangedrda · bzip2
version 2 · 206 KB
exact
3.212025-04-1536,601 × 40Unchangedrda · bzip2
version 2 · 206 KB
exact
3.202024-10-2936,601 × 40Unchangedrda · bzip2
version 2 · 206 KB
exact
3.192024-04-3036,601 × 40–rda · bzip2
version 2 · 206 KB
exact

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