CellaRepertorium
Bioc removedData structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)
Release Lineage
Entered 3.12 · Oct 28, 2020
Removed after 3.20 · Oct 30, 2024
Description
Methods to cluster and analyze high-throughput single cell immune cell repertoires, especially from the 10X Genomics VDJ solution. Contains an R interface to CD-HIT (Li and Godzik 2006). Methods to visualize and analyze paired heavy-light chain data. Tests for specific expansion, as well as omnibus oligoclonality under hypergeometric models.
None published for Bioconductor
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People
- Andrew McDavid author maintainer
- Yu Gu author
- Thomas Lin Pedersen contributor
- Erik VonKaenel author
- Aaron Wagner author
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