BloodCancerMultiOmics2017
Bioc current"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
61 19 exported
Complexity
3.3 avg / 26 max
Call network
61 nodes / 50 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
10,227
Files
77
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
19
Internal functions
42
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
LGPL (>= 3)
License flags
not SPDX, not OSI
History
Versions
17
First release
2018-08-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 31
- Examples that run
- 94%17 run in a plain check · 1 hold no code
- Exported functions with examples
- 95%
- Documented parameters
- 95%
- Return-value docs
- 95%
- Help pages citing references
- 6%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| conctab | data.frame | 64 × 5 | No other package |
| cytokineViab | tibble | 324 × 11 | No other package |
| day23rep | – | – | – |
| dds | – | – | – |
| drpar | – | – | – |
| drugs | data.frame | 91 × 8 | No other package |
| exprTreat | – | – | – |
| genSymbols | data.frame | 54,964 × 2 | No other package |
| gg | list | 6 elements | No other package |
| ggM | list | 6 elements | No other package |
| ggU | list | 6 elements | No other package |
| lpdAll | – | – | – |
| methData | – | – | – |
| mutCOM | – | – | – |
| patmeta | data.frame | 265 × 10 | No other package |
| validateExp | tibble | 3,200 × 4 | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("BloodCancerMultiOmics2017")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.