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M3D

Bioc removed

Identifies differentially methylated regions across testing groups

v1.22.0 · Artistic License 2.0

Release Lineage

Entered 3.0 · Oct 14, 2014

Removed after 3.11 · Apr 28, 2020

1.0 In 12 of 49 releases 3.23

Description

This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

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