EP

Ellis Patrick

2 packages On CRAN since Oct 2013 (13 years) · last active 2 years ago On Bioconductor since Oct 2014 (12 years) · last active 3 years ago

R-Universe CRAN Search

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Downloads

743

Last 30 days

2.2K

Last 90 days

8K

Last year

Average trend: -11.2% (30d vs prior 30d)

Top Packages by Downloads

directPA

442

edgebundleR

301

Recent Activity

directPA updated v1.5.1 Nov 15, 2023

Direction Analysis for Pathways and Kinases

directPA updated v1.5 Nov 15, 2020

Direction Analysis for Pathways and Kinases

directPA updated v1.4 Nov 6, 2019

Direction Analysis for Pathways and Kinases

directPA updated v1.3 Mar 22, 2016

Direction Analysis for Pathways and Kinases

edgebundleR updated v0.1.4 Mar 18, 2016

Circle Plot with Bundled Edges

edgebundleR new v0.1.2 Nov 15, 2015

Circle Plot with Bundled Edges

directPA updated v1.2 Jun 17, 2015

Direction Analysis for Pathways and Kinases

directPA updated v1.1 Mar 19, 2015

Direction Analysis for Pathways and Kinases

directPA new v1.0 Oct 21, 2013

Direction Analysis for Pathways and Kinases

Co-authored Packages

1 package

Package	Title	Downloads	Version
edgebundleR 301 downloads/30d	Circle Plot with Bundled Edges	301	0.1.4

Other Roles

1 package

Package	Title	Downloads	Version
directPA 442 downloads/30d	Direction Analysis for Pathways and Kinases	442	1.5.1

Bioconductor Packages

10 packages

Package	Title	Category	Version
ClassifyR Bioc	A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing	software	3.16.0
MoleculeExperiment Bioc	Prioritising a molecule-level storage of Spatial Transcriptomics Data	software	1.12.0
SpatialDatasets Bioc	Collection of spatial omics datasets	experiment	1.10.0
Statial Bioc	A package to identify changes in cell state relative to spatial associations	software	1.14.0
lisaClust Bioc	lisaClust: Clustering of Local Indicators of Spatial Association	software	1.20.0
scFeatures Bioc	scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction	software	1.12.0
simpleSeg Bioc	A package to perform simple cell segmentation	software	1.14.0
spicyR Bioc	Spatial analysis of in situ cytometry data	software	1.24.1
spicyWorkflow Bioc removed	Performing a Spatial Analysis of Multiplexed Tissue Imaging Data		1.10.0
treekoR Bioc	Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations	software	1.20.0

Package repositories

Repositories of packages Ellis Patrick maintains where an AI coding tool was found. Other people commit to these repositories too, so each line describes the repository, not Ellis Patrick's own work.

SydneyBioX/lisaClust ↗(organization: SydneyBioX)
Packages: lisaClust
- Claude Codefirst seen on or before 2026-10-09
  Pull request it wrote: opened by a project member
  Commits: at least 16 crediting it in the message
SydneyBioX/simpleSeg ↗(organization: SydneyBioX)
Packages: simpleSeg
- Claude Codefirst seen on or before 2026-10-13
  Pull request it wrote: opened by a project member
  Commits: at least 8 crediting it in the message
SydneyBioX/spicyR ↗(organization: SydneyBioX)
Packages: spicyR
- Claude Codefirst seen on or before 2026-09-28
  Pull request it wrote: opened by a project member
  Commits: at least 90 crediting it in the message

Finding nothing does not mean no tool was used. How this is detected.