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MoleculeExperiment

Bioc current

Prioritising a molecule-level storage of Spatial Transcriptomics Data

v1.12.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.17 · Apr 26, 2023

Current · Requires R 4.6

1.0 In 7 of 49 releases 3.23

Description

MoleculeExperiment contains functions to create and work with objects from the new MoleculeExperiment class. We introduce this class for analysing molecule-based spatial transcriptomics data (e.g., Xenium by 10X, Cosmx SMI by Nanostring, and Merscope by Vizgen). This allows researchers to analyse spatial transcriptomics data at the molecule level, and to have standardised data formats accross vendors.

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Topics

Software › Infrastructure › DataImport
Software › Infrastructure › DataRepresentation
Software › Infrastructure
Software
Software › Technology › Spatial
Software › ResearchField › Transcriptomics

Depended on by (1)

Bioconductor (1)

SpatialFeatures

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