Statial
Bioc currentA package to identify changes in cell state relative to spatial associations
Release Lineage
Entered 3.16 · Nov 2, 2022
Current · Requires R 4.6
Description
Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
28 16 exported
Complexity
5 avg / 13 max
Call network
28 nodes / 16 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,501
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
16
Internal functions
12
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.28
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
8
First release
2022-11-17
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 18
- Examples that run
- 100%14 run in a plain check
- Exported functions with examples
- 93%
- Documented parameters
- 100%
- Return-value docs
- 47%
- Help pages citing references
- 6%
Repository practices
4 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/sydneybiox/statial on 2026-10-21.
GitHub Pages site last deployed 2023-10-25 · The repository has a site deploy workflow
pkgdown site last built 2023-10-25
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| kerenKontextual | data.frame | 16,000 × 6 | No other package |
| kerenSCE | – | – | – |
Topics
Suggested by (2)
People
- Farhan Ameen author maintainer
- Shila Ghazanfar author
- Sourish Iyengar author
- Ellis Patrick author
- Alex Qin author
Cite
Cite this package
Run in R for the authors' entry:
citation("Statial")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1101/2024.09.03.611109.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.