m6Aboost
Bioc currentm6Aboost
Release Lineage
Entered 3.14 · Oct 27, 2021
Current · Requires R 4.6
Description
This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
10 4 exported
Complexity
2 avg / 4 max
Call network
10 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
913
Files
30
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
6
Testing
Has tests
Yes
Test-to-code ratio
0.18
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
10
First release
2021-10-26
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 4
- Examples that run
- 100%4 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- m6Aboost Vignettes HTML
Repository practices
Checks run against github.com/zarnackgroup/m6aboost on 2026-10-22.
No development-tooling practices detected in the upstream repository.
Datasets
Topics
People
- You Zhou author maintainer
- Kathi Zarnack author
Cite
Cite this package
Run in R for the authors' entry:
citation("m6Aboost")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/nar/gkab485.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.