Packages
555 packages on Bioconductor tagged Homo_sapiens or DNAMethylation or Proteomics, most distinct IPs first
Homo_sapiens, DNAMethylation and Proteomics in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 29,813 | 42 |
| ProtGenerics Generic infrastructure for Bioconductor mass spectrometry packagesLaurent Gatto | Laurent Gatto | software | 28 Apr 2026 | 13,018 | 1 |
| TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva | Tiago Chedraoui Silva | software | 28 Apr 2026 | 6,750 | 103 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| pathview a tool set for pathway based data integration and visualizationWeijun Luo | Weijun Luo | software | 28 Apr 2026 | 5,706 | 50 |
| mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann | Steffen Neumann | software | 28 Apr 2026 | 5,639 | 15 |
| MSnbase Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto | Laurent Gatto | software | 9 Aug 2026 | 5,521 | 134 |
| mixOmics Omics Data Integration ProjectDerek Lei | Derek Lei | software | 28 Apr 2026 | 5,370 | 83 |
| MsCoreUtils Core Utils for Mass Spectrometry DataRforMassSpectrometry Package Maintainer | RforMassSpectrometry Package Maintainer | software | 28 Apr 2026 | 5,024 | 13 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| QFeatures Quantitative features for mass spectrometry dataLaurent Gatto | Laurent Gatto | software | 28 Apr 2026 | 4,540 | 99 |
| mzID An mzIdentML parser for RLaurent Gatto | Laurent Gatto | software | 28 Apr 2026 | 4,532 | 11 |
| Spectra Spectra Infrastructure for Mass Spectrometry DataRforMassSpectrometry Package Maintainer | RforMassSpectrometry Package Maintainer | software | 9 Jun 2026 | 4,465 | 30 |
| bumphunter Bump HunterTamilselvi Guharaj | Tamilselvi Guharaj | software | 28 Apr 2026 | 4,268 | 83 |
| hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,227 | 43 |
| minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 4,041 | 143 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| PSMatch Handling and Managing Peptide Spectrum MatchesLaurent Gatto | Laurent Gatto | software | 28 Apr 2026 | 3,831 | 112 |
| EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 3,389 | 81 |
| MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno | Sergio Oller Moreno | software | 7 Jul 2026 | 3,096 | 0 |
| ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot | Etienne A. Thevenot | software | 28 Apr 2026 | 2,969 | 97 |
| IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 2,852 | 144 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |
| methylumi Handle Illumina methylation dataSean Davis | Sean Davis | software | 16 Aug 2026 | 2,825 | 158 |
| bsseq Analyze, manage and store whole-genome methylation dataKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 2,718 | 89 |
| lumi BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang | Lei Huang | software | 28 Apr 2026 | 2,454 | 165 |
| MsExperiment Infrastructure for Mass Spectrometry ExperimentsLaurent Gatto | Laurent Gatto | software | 28 Apr 2026 | 2,287 | 112 |
| hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,996 | 43 |