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Topic: SingleCell or Metabolomics

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Release: Release 3.0 (2014)

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26 packages on Bioconductor tagged SingleCell or Metabolomics, most distinct IPs first

SingleCell and Metabolomics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
graphite
GRAPH Interaction from pathway Topological EnvironmentGabriele Sales		Gabriele Salessoftware28 Apr 20267,01248
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
RMassBank
Workflow to process tandem MS files and build MassBank recordsRMassBank at Eawag		RMassBank at Eawagsoftware28 Apr 20261,116175
fmcsR
Mismatch Tolerant Maximum Common Substructure SearchingThomas Girke		Thomas Girkesoftware28 Apr 20261,08768
ChemmineOB
R interface to a subset of OpenBabel functionalitiesThomas Girke		Thomas Girkesoftware28 Apr 20261,0478
metaMS
MS-based metabolomics annotation pipelineYann Guitton		Yann Guittonsoftware28 Apr 20261,016160
BridgeDbR
Code for using BridgeDb identifier mapping framework from within REgon Willighagen		Egon Willighagensoftware28 Apr 20269043
bioassayR
Cross-target analysis of small molecule bioactivityThomas Girke		Thomas Girkesoftware28 Apr 202684474
eiR
Accelerated similarity searching of small moleculesThomas Girke		Thomas Girkesoftware28 Apr 202679770
cosmiq
cosmiq - COmbining Single Masses Into QuantitiesDavid Fischer		David Fischersoftware28 Apr 2026792146
metabomxtr
A package to run mixture models for truncated metabolomics data with normal or lognormal distributionsMichael Nodzenski		Michael Nodzenskisoftware28 Apr 202677149
MAIT
Statistical Analysis of Metabolomic DataPol Sola-Santos		Pol Sola-Santossoftware28 Apr 2026756204
BiGGR
Constraint based modeling in R using metabolic reconstruction databases		no date on record433
Metab
Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.		no date on record402
PAPi
Predict metabolic pathway activity based on metabolomics data		no date on record266
mQTL.NMR
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data		no date on record192
iontree
Data management and analysis of ion trees from ion-trap mass spectrometry		no date on record178