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Topic: SingleCell or GeneRegulation

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Release: Release 3.0 (2014)

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22 packages on Bioconductor tagged SingleCell or GeneRegulation, most distinct IPs first

SingleCell and GeneRegulation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) AnalysisGe Tan		Ge Tansoftware28 Apr 20264,72179
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
CNEr
CNE Detection and VisualizationBoris Lenhard		Boris Lenhardsoftware28 Apr 20262,692112
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
viper
Virtual Inference of Protein-activity by Enriched Regulon analysisMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 20262,06087
qpgraph
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo		Robert Castelosoftware28 Apr 20261,49581
BCRANK
Predicting binding site consensus from ranked DNA sequencesAdam Ameur		Adam Ameursoftware28 Apr 20261,13815
rTRM
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction NetworksDiego Diez		Diego Diezsoftware28 Apr 20261,11747
RTN
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulonsMauro Castro		Mauro Castrosoftware28 Apr 20261,023142
triplex
Search and visualize intramolecular triplex-forming sequences in DNAJiri Hon		Jiri Honsoftware28 Apr 20261,02217
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 20261,01350
MethylMix
MethylMix: Identifying methylation driven cancer genesOlivier Gevaert		Olivier Gevaertsoftware28 Apr 202699540
tRanslatome
Comparison between multiple levels of gene expressionToma Tebaldi		Toma Tebaldisoftware28 Apr 2026956110
CRISPRseek
Design of guide RNAs in CRISPR genome-editing systemsLihua Julie Zhu		Lihua Julie Zhusoftware28 Apr 2026952141
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
blima
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) levelVojtěch Kulvait		Vojtěch Kulvaitsoftware28 Apr 202686866
rTRMui
A shiny user interface for rTRMDiego Diez		Diego Diezsoftware28 Apr 2026813101
GSReg
Gene Set Regulation (GS-Reg)Bahman Afsari		Bahman Afsarisoftware28 Apr 202680583
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202666831
CoRegNet
CoRegNet : reconstruction and integrated analysis of co-regulatory networks		no date on record469
MoPS
MoPS - Model-based Periodicity Screening		no date on record223