Packages
13 packages on Bioconductor tagged SingleCell or Epigenetics, most distinct IPs first
SingleCell and Epigenetics in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| bumphunter Bump HunterTamilselvi Guharaj | Tamilselvi Guharaj | software | 28 Apr 2026 | 4,268 | 83 |
| minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 4,041 | 143 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| DiffBind Differential Binding Analysis of ChIP-Seq Peak DataRory Stark | Rory Stark | software | 21 Jul 2026 | 2,490 | 141 |
| DMRcate Methylation array and sequencing spatial analysis methodsTim Peters | Tim Peters | software | 3 May 2026 | 1,838 | 224 |
| GOTHiC Binomial test for Hi-C data analysisBorbala Mifsud | Borbala Mifsud | software | 28 Apr 2026 | 1,161 | 86 |
| BEAT BEAT - BS-Seq Epimutation Analysis ToolkitKemal Akman | Kemal Akman | software | 28 Apr 2026 | 1,069 | 70 |
| chipenrich Gene Set Enrichment For ChIP-seq Peak DataKai Wang | Kai Wang | software | 28 Apr 2026 | 997 | 158 |
| chipenrich.data Companion package to chipenrichKai Wang | Kai Wang | experiment | 5 May 2026 | 389 | 89 |
| chroGPS chroGPS2: Generation, visualization and differential analysis of epigenome maps | no date on record | 354 | |||
| COHCAP CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data | no date on record | 343 |