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Topic: VariantAnnotation or Bayesian or MicroarrayData

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Release: Release 2.7 (2010)

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20 packages on Bioconductor tagged VariantAnnotation or Bayesian or MicroarrayData, most distinct IPs first

VariantAnnotation, Bayesian and MicroarrayData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202644,6566
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202631,06510
pcaMethods
A collection of PCA methodsHenning Redestig		Henning Redestigsoftware28 Apr 20267,21410
baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,16820
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,03355
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202696755
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202690511
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 202682250
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202680594
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026522144
davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber		Wolfgang Huberexperiment5 May 202631576
Hiiragi2013
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineagesWolfgang Huber		Wolfgang Huberexperiment23 Jun 202628867
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tilingKristof De Beuf		Kristof De Beufexperiment5 May 202627353
ConnectivityMap
Functional connections between drugs, genes and diseases as revealed by common gene-expression changesPaul Shannon		Paul Shannonexperiment5 May 20262320
curatedBreastData
Curated breast cancer gene expression data with survival and treatment informationLevi Waldron		Levi Waldronexperiment23 Jul 202623177
mammaPrintData
RGLists from the Glas and Buyse breast cancer studiesLuigi Marchionni		Luigi Marchionniexperiment5 May 20262220
FlowSorted.DLPFC.450k
Illumina HumanMethylation data on sorted frontal cortex cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026215144
FlowSorted.CordBloodNorway.450k
Illumina HumanMethylation data on sorted cord blood cell populationskristina gervin		kristina gervinexperiment5 May 2026211144
ccdata
Data for Combination Connectivity Mapping (ccmap) PackageAlex Pickering		Alex Pickeringexperiment5 May 20262000
FlowSorted.CordBlood.450k
Illumina 450k data on sorted cord blood cellsShan V. Andrews		Shan V. Andrewsexperiment5 May 2026191144