Packages

911 packages on Bioconductor tagged AnnotationData or Epigenetics or Annotation, most distinct IPs first

AnnotationData, Epigenetics and Annotation in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
GenomicRanges Representation and manipulation of genomic intervalsHervé Pagès	Hervé Pagès	software	28 Apr 2026	56,974	10
AnnotationDbi Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	47,941	41
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer	Bioconductor Maintainer	annotation	no date on record	36,797	0
GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	33,694	42
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	32,392	10
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
GOSemSim GO-terms Semantic Similarity MeasuresGuangchuang Yu	Guangchuang Yu	software	30 Jun 2026	27,495	48
rtracklayer R interface to genome annotation files and the UCSC genome browserMichael Lawrence	Michael Lawrence	software	28 Apr 2026	26,119	56
biomaRt Interface to BioMart databases (i.e. Ensembl)Hugo Gruson	Hugo Gruson	software	28 Apr 2026	24,571	61
annotate Annotation for microarraysBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	22,557	44
GenomicFeatures Query the gene models of a given organism/assemblyH. Pagès	H. Pagès	software	28 Apr 2026	19,218	74
BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès	Hervé Pagès	software	28 Apr 2026	14,375	57
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
reactome.db A set of annotation maps for reactomeWillem Ligtenberg	Willem Ligtenberg	annotation	no date on record	7,578	42
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu	Erqiang Hu	annotation	no date on record	5,277	42
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
topGO Enrichment Analysis for Gene OntologyFederico Marini	Federico Marini	software	28 Apr 2026	3,228	48
org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,202	42
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	2,437	63
goseq Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini	Federico Marini	software	28 Apr 2026	2,404	104
Category Category AnalysisBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	2,355	57
TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,192	75
BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,152	58